Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1750 ATGGACGACCACAACCCATACCCCATTCTCACGCCTTCAGGATTTCCTCGCCAAAACAAACCCTCTGTTGCAGACGACGACGTCATGGAGCTGCTATGGCATAACGGCCAGGTCGTGATGCAGAGTCAGAACCAGCGTTCTCTCACAAAACCGACGCCGCCATCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCACGGCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCGAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGATGAACCTCCGTTGGATCAGGCTTTCTGCACCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCAGCGCCATGCAAACTCTCACTACATCTCAGCTGACGGACCACCGCCCCATGTCTGCACCGCCTCGACCTCCAATTCCGCTGCCGAGGCCGCCGGAACCGAAGACGCCGAACTTCGCGTACTTCGTGAGGCACAACACGAGAGCCGCCGAGCAGAGCGTGAAGGCCGCTGCGAGGGAATCCACAGTTGTGGATTCGTGCGATACGCCGACGGCCACGGCAGCGGTTTCGGAAACTGTGAGGAACGCGGCGGAACCGGAGGAAGGAGGCGCCGGCGCTCCTGTGCCTTCGACAAGTGCCGGTGGCGGAAGGAGCACGATGATGTGCGACGTGACTGCGCCGTCGTCGCCGGGAGGTTCGAGTAGCATTGGCGAGCCGGTTCAGGTGGCGGCGGCGGAGGACCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGAGTCTCAGAGCGAGGATGTGGATTTTGATTCGGAAGCAAAAAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTACAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATACAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGAGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTTCCTGCAACTAATTCATCGAGAATGCAAGCAGAAAATCAGTCAGATAATCATATGGTTGCAGCTGGTCCACCTGATCCAAACCAGTCTCGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCCAATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGCAAGCCCAGTAACAATAGGGGCCATGAGAATCAGCAAAACCATTAG 1494 0.5341 MDDHNPYPILTPSGFPRQNKPSVADDDVMELLWHNGQVVMQSQNQRSLTKPTPPSRNSHDASAAGPSTAREIRPQLDNFNQHLFMREGEMASWLHYPIDDEPPLDQAFCTDFLYSPPTVNNSSAMQTLTTSQLTDHRPMSAPPRPPIPLPRPPEPKTPNFAYFVRHNTRAAEQSVKAAARESTVVDSCDTPTATAAVSETVRNAAEPEEGGAGAPVPSTSAGGGRSTMMCDVTAPSSPGGSSSIGEPVQVAAAEDRKRKGREAEEWESQSEDVDFDSEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMSMGMEMGMNRPVMPFPNMLPGSALPAAAHLGPRFPMPPFHMPRVPATNSSRMQAENQSDNHMVAAGPPDPNQSRLPNFTDPYQQYLGPHPMQFQVIQNQAMNQPNVGKPSNNRGHENQQNH* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1750 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 359 IPR036638 GO:0046983
Pvu1g1750 497 MobiDBLite consensus disorder prediction 251 266 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 466 497 - -
Pvu1g1750 497 Coils Coil 299 319 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 129 153 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 39 64 - -
Pvu1g1750 497 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 497 IPR031066 -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 417 497 - -
Pvu1g1750 497 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
Pvu1g1750 497 SMART finulus 299 348 IPR011598 GO:0046983
Pvu1g1750 497 CDD bHLH_AtPIF_like 293 356 - -
Pvu1g1750 497 Gene3D - 288 351 IPR036638 GO:0046983
Pvu1g1750 497 MobiDBLite consensus disorder prediction 422 436 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 39 72 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 220 244 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 139 153 - -
Pvu1g1750 497 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g1750 497 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 497 - -
Pvu1g1750 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Pvu1g1750 497 MobiDBLite consensus disorder prediction 203 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1750 Pvu-Chr1 43134636 43140822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1750 15 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.490 6.55e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g1750 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1750 - - gmx:100797225 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1750 1 43134636 43140822 Pvu1g1750 1 43134636 43140822 ECH
Pvu1g1750 1 43134636 43140822 Pvu7g1606 7 38056417 38060898 PCT