Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1748 ATGGCACCTAGAAACTTTGGCACCCAAATAACAGCACTTGTTGTAGATGACAATGTACTGAATAGAAAGATTCATCAAAAGCTGTTGGAGAGTGCTGGAGTGAGAAATCAAGAGGGTGTGGCCAATGGGAAAGAAGCAGTGGAGATTCATTGCCATGGACGAAGATTTGACCTTATTCTCATGGACATGGACATGCCTGTCATGAATGGCCTTGAGGCAACAAAGGAACTTCGTTCAATGGGCATTGGGAGCATGATTGTTGGTGTGTCATCACGTTGTACGGAAACAGAAATACGAAAATTTATGGAATCAGGGTTGAATGATTACCACGAGAAACCCTTGAACAGTGCTAAGCTTAATTCAATTCTTGATAAGATGAACCCTAGTTTTACTAGTTAA 399 0.4135 MAPRNFGTQITALVVDDNVLNRKIHQKLLESAGVRNQEGVANGKEAVEIHCHGRRFDLILMDMDMPVMNGLEATKELRSMGIGSMIVGVSSRCTETEIRKFMESGLNDYHEKPLNSAKLNSILDKMNPSFTS* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1748 132 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Pvu1g1748 132 SMART REC_2 10 123 IPR001789 GO:0000160
Pvu1g1748 132 Gene3D - 7 129 - -
Pvu1g1748 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 129 - -
Pvu1g1748 132 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Pvu1g1748 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 4 129 - -
Pvu1g1748 132 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
Pvu1g1748 132 SUPERFAMILY CheY-like 9 126 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1748 Pvu-Chr1 43093331 43094123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1748 10 119 Response Regulator Gene Family AT3G04280 49.107 2.51e-27 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu1g1748 Response_reg 1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1748 - - gmx:100794931 223.016