Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1732 ATGGCAACTCAAGGTCAAGTCATCACCTGCAAAGCTGCGGTGGCCTGGGAACCCAATAAGCCCTTGACAATTGAAGACGTCCAGGTGGCTCCGCCTCAGGCCGGCGAGGTTCGAGTTCAAATCCTCTACACCGCTCTCTGTCACACCGATGCTTACACTTGGGGCGGCAAGGATCCTGAAGGCCTCTTCCCCTGTATTCTCGGTCATGAAGCTGCTGGGATCGTGGAGAGTGTTGGAGAAGGTGTTACTGATGTTAAGCCTGGGGATCATGTCATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCAGGGAAGACCAACCTTTGCGCCAAGGTTCGCTCTGCCACTGGAGTTGGGGTCATGCTCAATGATGGCAAGAGTCGGTTCTCGATTAATGGAAAGCCCATTTATCATTTCATGGGAACTTCCACTTTTAGTCAATACACTGTTGTCCATGATGTTAGTGTAGCTAAGATTGACCCCATAGCTCCTCTGGACAAAGTTTGTCTTCTCGGATGTGGTGTTTCAACTGGCCTTGGAGCTGTGTGGAACACTGCAAAGGTTGAGCCAGGGACAATTGTTGCTATTTTTGGCCTTGGGACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGGATTATTGGCATAGATATTGACAGCAAGAAGTTTGATACTGCGAAGAACTTTGGAGTCACCGAGTTCATAAATCCAAATGAACTTGATAAACCAATTCAGCAGGTCATAATTGATCGTACAGATGGTGGAGTTGATTATAGCTTTGAGTGTATTGGAAATGTTTCTGTGATGAGAGCTGCTTTGGAATGCTGCCACAAGGGCTGGGGGACATCAGTTATCGTTGGTGTTGCAGCATCAGGTCAGGAAATATCAACCCGACCTTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACTGCTTTCGGTGGCTTCAAGAGCAGGTCACAGGTTCCTTGGCTCGTAGACAAGTACCTGAAGAAGGAAATCAAGGTTGATGAATACATTACCCATACTTTGACTCTCTCTGAGATCAACAAGGCTTTTGATCTTTTGCATGACGGGGGATGCCTTCGTTGTGTGCTTTCAACTCAAGAATGA 1140 0.4816 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKTCKSGKTNLCAKVRSATGVGVMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLDKVCLLGCGVSTGLGAVWNTAKVEPGTIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDTAKNFGVTEFINPNELDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHDGGCLRCVLSTQE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1732 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 378 - -
Pvu1g1732 379 Gene3D - 13 372 - -
Pvu1g1732 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Pvu1g1732 379 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Pvu1g1732 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pvu1g1732 379 PANTHER ALCOHOL DEHYDROGENASE 3 378 - -
Pvu1g1732 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Pvu1g1732 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pvu1g1732 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Pvu1g1732 379 Gene3D - 182 320 - -
Pvu1g1732 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Pvu1g1732 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1732 Pvu-Chr1 42849540 42852623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1732 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.444 2.97e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1732 K00121 - gmx:100499743 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1732 1 42849540 42852623 Pvu1g1732 1 42849540 42852623 ECH
Pvu1g1732 1 42849540 42852623 Pvu7g1585 7 37746322 37752248 PCT