Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1728 ATGAAACCAAAGAACTCAAGTTCCCAATTGAAAGCACTTGTTGTAGATGATGATAGAGTAAATCGAATGACTCATCAAGCGCTGTTGAAAAAAGTTGGGGTGGAAAATCTTGCTTCGGTGGAAAATGGCAAAAAAGCCGTGGACCTTCATTGCAATGGTGAAAGTTTTGACCTAATTCTCATGGATAAAGACATGCCTGTCATGAATGGAATTGAGGCAACAAAGCAACTTCGTTCAATGGGCATTCGTGACATGATTGTTGGTGTGTCATCATCACATGGTGCAGAGAATGTAGAAGCATTCATGGAAGCAGGACTAGATGACTACTACACAAAGCCCTTGACGGTTGATACGCTCAAAGCAATTCTTGATAAGATCAAGTCATGA 387 0.4083 MKPKNSSSQLKALVVDDDRVNRMTHQALLKKVGVENLASVENGKKAVDLHCNGESFDLILMDKDMPVMNGIEATKQLRSMGIRDMIVGVSSSHGAENVEAFMEAGLDDYYTKPLTVDTLKAILDKIKS* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1728 128 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 4 127 - -
Pvu1g1728 128 SMART REC_2 10 123 IPR001789 GO:0000160
Pvu1g1728 128 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
Pvu1g1728 128 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Pvu1g1728 128 SUPERFAMILY CheY-like 9 126 IPR011006 -
Pvu1g1728 128 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 127 - -
Pvu1g1728 128 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Pvu1g1728 128 Gene3D - 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1728 Pvu-Chr1 42826352 42827545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1728 10 115 Response Regulator Gene Family AT3G04280 49.074 4.67e-27 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu1g1728 Response_reg 7.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1728 - - var:108322984 237.269