Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g1711 | ATGAAGAAGATCAAGAACCAAATGAAAATCCAGCTTTTCATCTTCTTTTGCTACATTGGTTGTTCCTCCTATGGTTTCTCTGCTGCTGTAAATGATGAAGTATCGACTTTGCTTTCTATAAAAGCAAGTCTCATTGATCCATTAAACACTCTTCGGGATTGGAAACTGCATGACAAAGCACCGGGAAAGGATGCATCTCATTGTAGCTGGACTGGCATCAAATGCAACTCAGCTGGAGCCGTTGAGGAGCTTGATCTCTCCCACAAGAATCTCAGTGGTACAGTATCCAATGTTATACAAAGACTTAAAAGTCTTACCTCTCTCAACTTGTGTTGCAATGCTTTTTCATCACCATTGCCAAAATCCTTAGCCAATCTCACCACACTTAACAAACTTGATGTGAGCCAAAATTTCTTCGTTGGTGACTTTCCATTAGGCCTTGGAAGAGCATGGAGACTCATGACTTTAAATGCATCCAGCAATGAATTCTCAGGTTCTCTTCCTGAGGACCTTGGAAATGCCTCCTCCTTAGAGGTGCTTGATCTCAGAGGCAGCTTTTTTGTAGGGTCAGTTCCAAAATCATTCAGTAACTTGCATAAGTTGAGGTTCCTTGGTCTATCAGGGAACAATCTCACTGGTAAAATTCCTGGAGAGCTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGTGTCATTCCAGAAGAGTTTGGCAACCTCACCAATCTTAAGTATCTTGATTTAGCAGTAGCCAATCTTGGTGGTGAGATTCCAGGTGTATTGGGAAAGCTCAAGTTGTTGAATACAGTTTTCTTATACAACAACAATTTTGAAGACAGAATTCCAGCAGCAATTGGCAATATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAGGACAAATTCCGGCTGAAATAAGTCAGCTGAAGAATTTAAAACTTCTCAACTTGATGGGCAACCAGCTGACAGGTCCTGTGCCTTCTGGCTTTGGAGATTTACCACAACTGGAGGTACTTGAGCTATGGAACAATTCTTTGTCAGGGCCATTGCCAAGAAACCTTGGAAAGAATTCACCATTGCAATGGTTGGATGTGTCATCCAATTCTTTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTATTCAACAATGCCTTCTCTGGTCCAATTCCATCAAGCCTATCAACGTGTTTTTCACTTGTACGTGTTCGAATTCACAACAATTTTCTTTCAGGGACAGTTCCTGTGGGTCTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTTTCTGGTGGAATTCCTGATGACATTGCTTCTTCCACATCCCTTTCCTTCATTGATCTCTCAAGAAACAAACTTCACTCTTCTCTTCCCTCCACCGTCCTTTCCATTCCAAACCTGCAGGCTTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAATTCCAGGACTGTCCATCCCTTGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCATGTCAGAAGTTGGTAAATTTGAACCTCCAAAACAACCAATTGACTGGTGAAATCCCAAAATCTTTAGCTAAGATGCCTTCATTGGCCATGGTTGACCTTTCCAACAATTCTCTGACAGGCCAAATACCTGAAAGCTTTGGAATATCTCCAGCTCTTGAAGCACTCAATGTCTCATACAATAAGCTAGAAGGCCCAGTCCCAGCGAATGGAATACTAAGAACTGTAAACCCGAATGATCTTGTGGGCAATCTTGGCCTATGTGGTGGTGTCCTCCCTCCATGTGACCAAAACTCTGCATACTCCTCAAGGCAAAGAAGCTTACGCACAAAGCATATGATTACAGCATGGATCACTGGAATATCATCAATCCTAGTTATTGGGATAGCGATTGTGGTAGGTAGATCTTTGTACTTAAGATGGTACACTGATGGGTTTTGCTTCCGAGAAAGATTTTACAAGGGTAGCAAAGGATGGCCCTGGAGATTGATGGCATTTCAGCGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGCATGGGAGCCACAGGGATTGTTTATAAGGCTGAGGTACTGCAATCAAACACAGTTGTGGCAGTGAAAAAATTATGGAGAACAGGAACTGATATTGAAGTAGGACGTAGTGATGACCTTGTGGGGGAGGTGAATCTTTTAGGGAGACTAAGGCATAGGAACATTGTTAGACTATTAGGATTTCTTCATAATGACATTGATGTGATGATAGTTTATGAATTTATGCACAATGGCAACCTAGGAGAAGCCTTGCACGGTAGACAAGCAACCAGATTGCTTGTAGACTGGGTTTCACGGTACAACATAGCTCTAGGAGTTGCACAGGGACTTGCTTATCTTCATCATGATTGTCATCCCCCCGTTATCCATCGAGACATCAAGTCAAACAATATATTGCTTGATGCAAATCTTGAGGCACGGATAGCAGATTTTGGTTTAGCCAAGATGATGATCCAGAAGAATGAAACAGTCTCCATGGTTGCTGGATCTTATGGTTATATTGCCCCTGAATATGGATATGCCTTGAAGGTAGATGAGAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACAGGAAAGAGGCCTTTAGATCCAGACTTTGGAGAGTCAATAGACATTGTAGAGTGGATTAGAATGAAGATTAGAGACAACAAATCACTGGAAGAAGCATTAGACCCCAGTGTAGGAAATAGCAGGCATGTTGTAGAAGAGATGCTTCTAGTTCTAAGAATAGCAATTATTTGCACAGCCAAGCTCCCCAAGGACAGACCAACCATGAGGGATGTCATTATGATGCTTGGAGAGGCTAAGCCTCGAAGAAAGAGCAGTGGAAATGAAGCAGCTAACAACAAAGAGTCACCAGTTTTTAGCACATCACCGGTTAATGGCCTAATGTAG | 3063 | 0.4212 | MKKIKNQMKIQLFIFFCYIGCSSYGFSAAVNDEVSTLLSIKASLIDPLNTLRDWKLHDKAPGKDASHCSWTGIKCNSAGAVEELDLSHKNLSGTVSNVIQRLKSLTSLNLCCNAFSSPLPKSLANLTTLNKLDVSQNFFVGDFPLGLGRAWRLMTLNASSNEFSGSLPEDLGNASSLEVLDLRGSFFVGSVPKSFSNLHKLRFLGLSGNNLTGKIPGELGQLSSLEYMILGYNEFEGVIPEEFGNLTNLKYLDLAVANLGGEIPGVLGKLKLLNTVFLYNNNFEDRIPAAIGNMTSLQLLDLSDNMLSGQIPAEISQLKNLKLLNLMGNQLTGPVPSGFGDLPQLEVLELWNNSLSGPLPRNLGKNSPLQWLDVSSNSFSGEIPETLCSQGNLTKLILFNNAFSGPIPSSLSTCFSLVRVRIHNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDIASSTSLSFIDLSRNKLHSSLPSTVLSIPNLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQLTGEIPKSLAKMPSLAMVDLSNNSLTGQIPESFGISPALEALNVSYNKLEGPVPANGILRTVNPNDLVGNLGLCGGVLPPCDQNSAYSSRQRSLRTKHMITAWITGISSILVIGIAIVVGRSLYLRWYTDGFCFRERFYKGSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGATGIVYKAEVLQSNTVVAVKKLWRTGTDIEVGRSDDLVGEVNLLGRLRHRNIVRLLGFLHNDIDVMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIQKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDPDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNSRHVVEEMLLVLRIAIICTAKLPKDRPTMRDVIMMLGEAKPRRKSSGNEAANNKESPVFSTSPVNGLM* | 1021 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g1711 | 1020 | SUPERFAMILY | Protein kinase-like (PK-like) | 708 | 988 | IPR011009 | - | |
| Pvu1g1711 | 1020 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 839 | 851 | IPR008271 | GO:0004672|GO:0006468 | |
| Pvu1g1711 | 1020 | Gene3D | Ribonuclease Inhibitor | 387 | 628 | IPR032675 | - | |
| Pvu1g1711 | 1020 | ProSitePatterns | Protein kinases ATP-binding region signature. | 718 | 742 | IPR017441 | GO:0005524 | |
| Pvu1g1711 | 1020 | SUPERFAMILY | RNI-like | 287 | 597 | - | - | |
| Pvu1g1711 | 1020 | Pfam | Leucine rich repeat N-terminal domain | 31 | 76 | IPR013210 | - | |
| Pvu1g1711 | 1020 | SUPERFAMILY | L domain-like | 65 | 358 | - | - | |
| Pvu1g1711 | 1020 | Gene3D | Ribonuclease Inhibitor | 185 | 287 | IPR032675 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 438 | 462 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 558 | 582 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 486 | 509 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 198 | 222 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 102 | 125 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 294 | 318 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 342 | 366 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | LRR_typ_2 | 510 | 534 | IPR003591 | - | |
| Pvu1g1711 | 1020 | SMART | serkin_6 | 712 | 1011 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pvu1g1711 | 1020 | Gene3D | Phosphorylase Kinase; domain 1 | 712 | 796 | - | - | |
| Pvu1g1711 | 1020 | Gene3D | Transferase(Phosphotransferase) domain 1 | 797 | 1014 | - | - | |
| Pvu1g1711 | 1020 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 11 | 1000 | - | - | |
| Pvu1g1711 | 1020 | MobiDBLite | consensus disorder prediction | 1002 | 1020 | - | - | |
| Pvu1g1711 | 1020 | ProSiteProfiles | Protein kinase domain profile. | 712 | 1011 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pvu1g1711 | 1020 | Pfam | Protein kinase domain | 714 | 984 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pvu1g1711 | 1020 | Gene3D | Ribonuclease Inhibitor | 288 | 386 | IPR032675 | - | |
| Pvu1g1711 | 1020 | PANTHER | UNNAMED PRODUCT | 11 | 1000 | - | - | |
| Pvu1g1711 | 1020 | Gene3D | Ribonuclease Inhibitor | 28 | 184 | IPR032675 | - | |
| Pvu1g1711 | 1020 | Pfam | Leucine rich repeat | 273 | 331 | IPR001611 | GO:0005515 | |
| Pvu1g1711 | 1020 | Pfam | Leucine rich repeat | 487 | 547 | IPR001611 | GO:0005515 | |
| Pvu1g1711 | 1020 | MobiDBLite | consensus disorder prediction | 992 | 1020 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g1711 | Pvu-Chr1 | 42563101 | 42566608 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu1g1711 | 11 | 1020 | Receptor kinase-like Gene Family | AT1G08590 | 60.253 | 0.0 | 1185 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Pvu1g1711 | Pkinase | 4.1e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g1711 | - | - | gmx:100811284 | 1815.43 |