Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1709 ATGTCTAAAGATGATAACTCTTCACAGGATTCTTCATCTGATATTGAATTGGCTCTCTCCTTGACCCTCTCTCCCTATGCCCCAGCTTCCTCATTCAGTGGGATTACCATTCTCACTTCTGGAACCAAGAGACCTGTCTCTATTTCTGATTCTGGTTCTGATTCTGTTCTTCCTGCTACCTCTCCCAGACAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAACTATAATAGCCATGCAAAGTCACCAGCCACGGAAGTTTTCAATTCTACAGTTGACAAAAGAGCAAGCACTAGTACTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAACAACACTGTTTCCAAGGAAAACGTAAATCTCAGGAATTCCCTGTTTGTGAAAGTAAAAATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAATGTTCATGGTTCCTATGAAACCTTAGCTCAAACTTTGGAGGAAATGTTTGAAGAATCAACTACAGTCCTCCCTAACAAAGTAGGATCAAATGGAGAAGATCATGGTACAATAGTTGGAGGAAATGGGCATTCAAAATGGCTGGATGGTTCTTCCGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTCGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTCAGAATCATGAGGACACATGAAGCTAATGGACTTGCTCCAAGATTGGAAAGAAGAATAACAGATCGAAATGCAAGCTCATATAGATAA 777 0.4208 MSKDDNSSQDSSSDIELALSLTLSPYAPASSFSGITILTSGTKRPVSISDSGSDSVLPATSPRQVVGWPPLGAYRMNNYNSHAKSPATEVFNSTVDKRASTSTGVRKSADGGSDSNNTVSKENVNLRNSLFVKVKMDGIPIGRKVDLNVHGSYETLAQTLEEMFEESTTVLPNKVGSNGEDHGTIVGGNGHSKWLDGSSDFVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTHEANGLAPRLERRITDRNASSYR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1709 258 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 28 248 - -
Pvu1g1709 258 ProSiteProfiles PB1 domain profile. 129 237 IPR000270 GO:0005515
Pvu1g1709 258 SUPERFAMILY CAD & PB1 domains 123 233 - -
Pvu1g1709 258 Pfam AUX/IAA family 55 244 IPR033389 -
Pvu1g1709 258 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 248 IPR003311 GO:0005634|GO:0006355
Pvu1g1709 258 MobiDBLite consensus disorder prediction 90 120 - -
Pvu1g1709 258 Gene3D - 124 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1709 Pvu-Chr1 42556127 42559098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1709 51 246 B3 DNA Binding Superfamily AT3G61830 27.411 1.08e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu1g1709 AUX_IAA 6.5e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1709 K14484 - gmx:100789143 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1709 1 42556127 42559098 Pvu1g1709 1 42556127 42559098 ECH
Pvu1g1709 1 42556127 42559098 Pvu7g1947 7 42569435 42573865 PCT