Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1699 ATGGAAGCACGTCCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAACATAATAACATGGGGATGTCTGAAGCATTTTCTTCATCGTTGCCTGTCCTTCCAATGCCTCGAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTATGGAAAAAGGGCTTAAACCAAAACCTTTTACTCATTCGAATCATTTAACTACCAGTGGAGCTGTCGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGACCTTCATCACTCATCCTTTTCATCTCATGAAAAGGACCCTAGAAATACTCCTTTTATTTCACAGTCATTGAGTAACATGGCTTCACTGCCCTTATCTTATTCTTCAAATAGTGAACCAATAGCTTCTACAACCTCAACACCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCCCTGCCTAGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGGCAACTGAAGAGTATTCTAAGAGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCGTTGACTTCTAATTGGAATGAGCTTCTTGCTGACAACATTCCAGATCTCGAACCAAAGGCCTCAAATTCATCTTCACAACTTCCAATAGGACACCAATCTCAAAGCCATCAACAACTTAATGTTTCATCTGGAGAAAATCGTATTGGTGTTGCCCCATCTTCGTCAGCAAATTCGGTGCCTTCCAAGCCACGAATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTAGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATATAGGACAGCTAGATATAGACCCGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCAATAGAAGAGATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGATTGCACGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAGGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCGTCTGCTGTTGAGAGTCCATCTGGAGTTTCTTCTGATGCCATCAAAGATTCTGCGGCCAAAACTGAATCCGAAACAGTCAAAGTGGACCTTTGCGAGTCAGGACCAGATCAAGCCAATGGCAGTACCAAAGTTGAGGAAAGCTCATCGAAAGTGGATGAGAAGCAGGATCCTCCGGAATGTAAAGCTTCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTTCTAAAGCCCCAAAGCGTCCAAGGACTGAGGATTAA 1455 0.4234 MEARPTFSIERSNAKQHNNMGMSEAFSSSLPVLPMPREGTCPKLSDSQPAFMEKGLKPKPFTHSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKDPRNTPFISQSLSNMASLPLSYSSNSEPIASTTSTPYSNGNSVSWHTDSLPSFLDFPANTSIDNSQVESSACNIMATEEYSKRNDWQEWADQLISDDDPLTSNWNELLADNIPDLEPKASNSSSQLPIGHQSQSHQQLNVSSGENRIGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAVESPSGVSSDAIKDSAAKTESETVKVDLCESGPDQANGSTKVEESSSKVDEKQDPPECKASENPKQHASEDSSKAPKRPRTED* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1699 484 MobiDBLite consensus disorder prediction 1 20 - -
Pvu1g1699 484 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Pvu1g1699 484 MobiDBLite consensus disorder prediction 213 258 - -
Pvu1g1699 484 Coils Coil 346 366 - -
Pvu1g1699 484 MobiDBLite consensus disorder prediction 210 260 - -
Pvu1g1699 484 Pfam MYB-CC type transfactor, LHEQLE motif 343 390 IPR025756 -
Pvu1g1699 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 315 IPR017930 -
Pvu1g1699 484 MobiDBLite consensus disorder prediction 445 484 - -
Pvu1g1699 484 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 57 483 IPR044848 GO:0003700
Pvu1g1699 484 MobiDBLite consensus disorder prediction 398 484 - -
Pvu1g1699 484 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 57 483 - -
Pvu1g1699 484 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Pvu1g1699 484 MobiDBLite consensus disorder prediction 398 415 - -
Pvu1g1699 484 Gene3D - 257 316 - -
Pvu1g1699 484 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Pvu1g1699 484 MobiDBLite consensus disorder prediction 26 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1699 Pvu-Chr1 42477170 42484680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1699 1 432 G2-like Transcription Factor Family AT4G28610 48.984 3.55e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu1g1699 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1699 - - gmx:100810560 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1699 1 42477170 42484680 Pvu1g1699 1 42477170 42484680 ECH
Pvu1g1699 1 42477170 42484680 Pvu7g1954 7 42632675 42642148 ECH
Pvu1g1699 1 42477170 42484680 Pvu7g1954 7 42632675 42642148 PCT