Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1690 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCAGAAGATGATGAAGTGTCTGTGTGTGAGGGAGCCGGTCAAAGGGGAAGATGAAACGGTCCCTTCCTCGGAATCTCTTGCAATCAGGGAATTTTATTCTTCAACAGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATTGAGATGTTGGGGTCTGATTCTGGTAAAATAGACGAAACTGATTTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTTTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTAACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCCCAAAAAACAATCCTATTATTATTCTACTCCCCCAATGTCCATATACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAAGCGAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCACAAACTTGTAAAGTTATTCTGGACACAATTGAGTCTTCATTACCTGAAGGCTTGCCACAAAACTTCAGCAATGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAACTTACTGATTCTCCCCGTGATGTGATTTTGTCTTACCGTCGTGCACTCCTTCACCAATGGAATCTTGATGCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAGCTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTTTAATGATTTTGCTAAGAAAAATTTCTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGACCACCTTGCATTTGCTCTATCTGTTTCAGGGGATTTGACGGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGTACTGTCAATCGTAGAGAAAGGTACCATGCCTTATCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTAAGGAGATTGTTGAGTAAAGAGGACCCAAAGCATGTTCCTTCTTTGTTAATTGCTTCTAAGATATGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGAAGATGTGATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTGCTATTTCTAATTCTGAGAGGGTTGAGAGACAATCTGAGGCACTTCATTTTCTGGAAACTGCACACAAAGTGACCGGAATGAGTAACCCCCTTGTAATATACTGTTTGAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATGCAAAATGCTTTCTAAACTTGGAAGCTGGGTCCAGTGTTAAAGGGTGGTTATTGTTAGCCCGCATATTGTCAGCTAAAAAACAGTTTTTGGATGCCGAATCTATTATCAATGAGGCCTTAGATCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAATTGTGCAGGGCCAGTTGAAGAGTGCCATTAAAACATGTACTCAGCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTCGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCTTATCTGTACATAAGTCTGTCACGTTGGCAAGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACTATGTACGAAGCAAAGGGCGTTCACAAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTTCTTAGGCGGTGCAGTAATCGGTCAAATCCTGCAATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATATAATGCTTCTGCATGGTATAATCTTGGCATTTTTCACAAGGACGAGGGTACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2181 0.4154 MGSRVKQGRRLQKMMKCLCVREPVKGEDETVPSSESLAIREFYSSTASGRSGLDGEIEMLGSDSGKIDETDLSLRESGILDNEEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKQSYYYSTPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDTIESSLPEGLPQNFSNEGKLQETLSKVVELLPDLWKLTDSPRDVILSYRRALLHQWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYHALSLCYYGAGKDLVALNLLRRLLSKEDPKHVPSLLIASKICCENPDLAKDGASLARKVLENLDGRCDQLEGLSSCLLGVSLSTHSKFAISNSERVERQSEALHFLETAHKVTGMSNPLVIYCLSLEYAEQRKLDAALHYAKCFLNLEAGSSVKGWLLLARILSAKKQFLDAESIINEALDQTGIWDQGELLRTKAKLQIVQGQLKSAIKTCTQLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYLYISLSRWQDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGVHKEALKAFRDALNIDPGHVPSLISTAVVLRRCSNRSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMLEAAECFETANFLEESAPVEPFR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1690 726 PANTHER PROTEIN NPG1 7 726 IPR043376 -
Pvu1g1690 726 SUPERFAMILY TPR-like 528 713 IPR011990 GO:0005515
Pvu1g1690 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Pvu1g1690 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Pvu1g1690 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Pvu1g1690 726 Gene3D Tetratricopeptide repeat domain 81 401 IPR011990 GO:0005515
Pvu1g1690 726 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 726 - -
Pvu1g1690 726 SUPERFAMILY TPR-like 436 556 IPR011990 GO:0005515
Pvu1g1690 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Pvu1g1690 726 SMART tpr_5 150 183 IPR019734 GO:0005515
Pvu1g1690 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Pvu1g1690 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Pvu1g1690 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Pvu1g1690 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Pvu1g1690 726 Gene3D Tetratricopeptide repeat domain 430 610 IPR011990 GO:0005515
Pvu1g1690 726 Gene3D Tetratricopeptide repeat domain 611 714 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1690 Pvu-Chr1 42399818 42404615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1690 15 726 Calmodulin-binding Proteins AT4G28600 54.608 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1690 K21843 - gmx:100784353 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1690 1 42399818 42404615 Pvu1g1690 1 42399818 42404615 ECH
Pvu1g1690 1 42399818 42404615 Pvu7g1959 7 42675307 42676637 PCT
Pvu7g1960 7 42678174 42680521 Pvu1g1690 1 42399818 42404615 PCT