Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1682 ATGGATCATGTTATTGGTGGGAAATTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATTGCTGTCAATATACAAACTGGAGAGGAGGTGGCTATCAAGCTGGAACCTGCGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATCTGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGATTACAATGCCATGGCAATCGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAATCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTGATTAACAGAGTTGAATATATGCATTCTAGAGGCTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTGATGGGCCTAGGACGTAAAGCAAACCAGGTTTACATCATCGACTATGGCCTTGCAAAGAAATATAGGGATCTTCAGACACATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTTAACACCCATCTTGGAATCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTCCGATAGAGGTGCTTTGCAAATCGCATCCCTCAGAGTTTGTATCATATTTTCACTATTGCCGATCGCTGCGGTTTGAGGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGCGCCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAGATATCAGTTGGGAAAGAGATTCGTGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCTCGAAGGAATCCAACAAGTTCCAGTCCTCGTGGTGATCACTCCAAACATAGGGGTTTTGATGAAGTAGCAGTGCACAAGGATGTGTATCATGAAGAGAAGGGACGGAATTCATCTCGATATGGCAGCAGTTCAAGAAGAGCCATAATCTCATCATCAACCAGGCCAAGTTCCTCCGGGGATCATACTGACAGTCGTACTGGCCGGCTCACCTCAAGTGTGAGCCGTCCATCTACTAGAAACGCTCAACCGACATACACGCGGTCTGGATCTACCAGAGGCAACCGCGATGATCCCCTCCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1359 0.4386 MDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAIKLEPAKTKHPQLHYESKLYLLLQGGTGIPHLKWFGVEGDYNAMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSHPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGRHESGKAAMHAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRGFDEVAVHKDVYHEEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSVSRPSTRNAQPTYTRSGSTRGNRDDPLRSFELLSIRK* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1682 452 MobiDBLite consensus disorder prediction 436 452 - -
Pvu1g1682 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pvu1g1682 452 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1682 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pvu1g1682 452 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 423 - -
Pvu1g1682 452 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Pvu1g1682 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1682 452 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Pvu1g1682 452 MobiDBLite consensus disorder prediction 301 452 - -
Pvu1g1682 452 PANTHER CASEIN KINASE-RELATED 1 423 - -
Pvu1g1682 452 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1682 452 MobiDBLite consensus disorder prediction 351 382 - -
Pvu1g1682 452 MobiDBLite consensus disorder prediction 325 339 - -
Pvu1g1682 452 MobiDBLite consensus disorder prediction 383 435 - -
Pvu1g1682 452 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1682 Pvu-Chr1 42345062 42351275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1682 7 236 CBL-interacting serine-threonine protein kinases AT4G24400 28.452 1.54e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pvu1g1682 Pkinase 4.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1682 K08960 - gmx:100781494 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1682 1 42345062 42351275 Pvu1g1682 1 42345062 42351275 ECH
Pvu1g1682 1 42345062 42351275 Pvu7g1966 7 42753181 42759880 PCT