Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1681 ATGGATTCTGCAAGGAGTTGGTTACAGAAATTTCAACCACGAGATAAATTAAGAGCCTCTACTAGAAAGAAAGATGATACTCATGGTGGAAACGAAGCTCCAACCGTGCCTATGGACGATGCAACTCTTTCCAATATCACAAAGCAGAAGGTTGCTGCAGCTAAACAATACATTGAAAACCACTATAAGGAACAGATGAAGAACCTTCAGGAAAGGAAAGAACGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTATCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACAGAATATATGCGTCTTCAAAGACATAAGATGGGTGTCGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAAGGAAAAGGCTACAGATCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGATGAGTATTTATATCTTATTATGGAATATCTACCTGGTGGGGATATGATGACTCTCCTCATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTGGGAGAAACAGTTCTAGCTATTGAATCAATACATAAACGCAATTATATACATAGGGATATTAAGCCTGATAACTTATTACTTGATAAATATGGACACTTGAGACTGTCTGATTTTGGATTATGTAAACCATTAGACTGTAGTACACTTGAAGAAACGGATTTTTCCACTGGTCAAAATACAAATGGAGTTGTACAAAATGATGAATCTGGACGCACACAACAAGAACAATTGCAACATTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACTGTCGGTACACCAGACTATATTGCTCCAGAAGTTTTATTAAAGAAAGGCTATGGAATGGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGTTGGTGGGATATCCGCCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAATTGGAGATCTCATTTAAAGTTTCCTGAAGAAGCAAGGTTAACTATAGAAGCTAAAGATCTTATAAGTAAGCTTTTATGTAATGTGAGCCAGAGACTGGGCTCAAATGGTGCAGAAGAAATAAAGGTTCATCCATTTTTCAATGGTGTTGAATGGGAAAGATTGTATCAAATGGAAGCTGCATTTATTCCCGAGGTCAACGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACCACCAGGCTCAATCATCAGCAAGAGCTGGCGGTCCATGGAGGAAGATGCTTTCATCTAAAGACTTGAATTTTGTGGGATACACATACAAAAACTTTGAAATTGTCAACGACTATCAAGTTCCTGGGATGACTGAATTAAGGAAGAAAAGTTCGAAAGTAAAGAAGCCATCCATCAAGTCCCTCTTTGATGGTGATTCTGAAACATCTGAAATATCTGAGGCTTCTGATTCAATTGCAAGCACAACTAAAAAGTTTGATGATCTACCCACTAATTCAGAATAG 1632 0.3744 MDSARSWLQKFQPRDKLRASTRKKDDTHGGNEAPTVPMDDATLSNITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKATDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKRNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSTGQNTNGVVQNDESGRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRSHLKFPEEARLTIEAKDLISKLLCNVSQRLGSNGAEEIKVHPFFNGVEWERLYQMEAAFIPEVNDELDTQNFEKFDESDHQAQSSARAGGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMTELRKKSSKVKKPSIKSLFDGDSETSEISEASDSIASTTKKFDDLPTNSE* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1681 543 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 23 521 - -
Pvu1g1681 543 CDD STKc_NDR_like 118 480 - -
Pvu1g1681 543 Coils Coil 62 82 - -
Pvu1g1681 543 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pvu1g1681 543 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Pvu1g1681 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 521 - -
Pvu1g1681 543 SUPERFAMILY Protein kinase-like (PK-like) 93 457 IPR011009 -
Pvu1g1681 543 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pvu1g1681 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pvu1g1681 543 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1681 543 Pfam Protein kinase C terminal domain 434 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Pvu1g1681 543 Gene3D Transferase(Phosphotransferase) domain 1 308 435 - -
Pvu1g1681 543 Gene3D Transferase(Phosphotransferase) domain 1 204 277 - -
Pvu1g1681 543 Pfam Protein kinase domain 121 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1681 543 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Pvu1g1681 543 MobiDBLite consensus disorder prediction 9 30 - -
Pvu1g1681 543 MobiDBLite consensus disorder prediction 499 543 - -
Pvu1g1681 543 ProSiteProfiles Protein kinase domain profile. 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1681 543 MobiDBLite consensus disorder prediction 512 543 - -
Pvu1g1681 543 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1681 Pvu-Chr1 42311850 42316492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1681 1 509 AGC Kinase Gene Family AT1G03920 77.127 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Pvu1g1681 Pkinase 5.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1681 K08790 - gmx:100783286 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1681 1 42311850 42316492 Pvu7g2829 7 51244188 51253118 PCT
Pvu7g1968 7 42778808 42787102 Pvu1g1681 1 42311850 42316492 PCT