Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1676 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGCTTTTATCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGATGTTCTCAAGGGTACCTTGGTGGAAATTGACCTCCACATATGCGAACCATGGCAACTTCCAGAGGTGGCTAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACCACATCAGGGTATTGGAAAGCAACGGGGAAGGATCGGACGGTGGTGGATCCAACCACGCAAGAGGTTGTAGGGATGAGGAAAACGCTGGTGTTCTACCGGAACAGAGCTCCAAATGGCATCAAAACCGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGCTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAATGGTTCCAAAGTGATGTACGAATATGATACAACACCTCAATCCCTAACCATGGCTTCGTCATCTCCCACAAACCAAACCATGGCTGGTGGGTACAACAGATTTCCCACCTCTTTCACTTCCTCCATGCCATTGCCAACCCACCACCACCACCATCATCATTTCAACACAAACCAAAACTCTTCTTTCATGGATCTGCTTCACTTCTCTCGGGACACCAACACCAACAACACCATCGTTACTCAGATTAGTTCCAAAGGAGATGATGGATATGGTTTCTTGTGGGACATGGATCTAGAAGAAAATAGCCTAGAAGATGGCGTGGCTTCAAACTTGGACGCAATAACGTTTGAGATCGACAATAATCACAATGATAATAATATGGTATTCCTATAA 879 0.4733 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEDVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNGSKVMYEYDTTPQSLTMASSSPTNQTMAGGYNRFPTSFTSSMPLPTHHHHHHHFNTNQNSSFMDLLHFSRDTNTNNTIVTQISSKGDDGYGFLWDMDLEENSLEDGVASNLDAITFEIDNNHNDNNMVFL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1676 292 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Pvu1g1676 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 284 - -
Pvu1g1676 292 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 284 - -
Pvu1g1676 292 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Pvu1g1676 292 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Pvu1g1676 292 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1676 Pvu-Chr1 42237614 42243817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1676 6 164 NAC Transcription Factor Family AT1G56010 56.977 7.33e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g1676 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1676 - - gmx:100806284 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1676 1 42237614 42243817 Pvu7g1975 7 42883129 42887532 PCT