Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1675 ATGATGGAAGCGGATAATGATTGCCCCAAATATCAGGAATACAAAAATCATTCAGTTCCCCCTGGTTTTGTATCCCTCTCATCTTTCATTTTGAGAAGGGTTGGAAATGTTAAGAAAAATGACAAATCTTCGACAATCTGCATGAAGACTAAACTTGAGACGAATGGCATTAATGCTTATAGCCAGGGTCTTATGCATCGGCCGTGGATAAACATGGACATGTGCAATCACCACAAGCCTGAGGAATCTCATACAAAGCATCTTCCTATGAACCTACCTTTAAATGCTGGTCGTCCAAAAGGGACCATACGTGGATGTCCTAATTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCGATAAGAGAACCTTTGGAAGAAACTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTCCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAAAATATATGGGAAAAGTCTGAATTTGTCGCTCAGATTCAGCGGATTGATGGACACCAAGTTCAGCATACTCAAGAAATTATGGCTAGTTCACGTGAACATACAAAAACCAAGAGAAAAAGAGATGTAAAAGTAGCTTTGGGCCCTCAGCTTTGTAAAAGAAACACCAGCACTCCAAATAACCATAATGTTGAAGAATGTGATTATGAGTCTGAACCTGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTATTTAAGAACCAGTACTTCAATTACAAGGATAAGAAAAAATTCATAGGTTCCAATATAAAGTTGGCTATACGTCAGCAGTGGGAACCATCTGTGGAGAATATTGAAGGTGAATATGGCCGAATTGTTCAAAATCCCACCGAAGAAATTGAGGTGCTTTGTTGTAAAAAATTGGAGGCTGGAGTTTTTGGAAGTGGGTTTCCGACAGTTTCTGATCCTGTGGCGGCACACGCTTACCCTGAATATGTGAAAGCTGGATGGAACTTGAATAATATGCTTTCAGATTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTCATGTAACCTTGCCCCCAATATTAGTGTGGGAATGTGCTTCTCTGCAGACAACTGGAAAGTTGAAGAACACCACTTATACTCATTATCTTACATACATTTGGGAGAACCAAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGCTAACTTTGAAACAATTTGGAAAAAGTATCTACCAGATCTGCATGCAGGAAAGCCTCGTATGCAAGATAATATGGAGATGCAATTATCATGTTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTGGTGAATTTGTTCTTGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAATAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTAATAGAACTTTATCGTGAACAGAGGAAAAAGACATTACTTTCATATGACAAGCTTTTGTTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTGTGCATGAAGAGCACGTCGTCCGACAGCTTAACATATAAAGGTGCCTATCAACAAAATGAGTTCTTAACAAAAGCTTTCAACTCTCGCATTAAGAGTGAAAGTTTGAAGAGGAAATTTCTTTCCAGTTCTTTAGTCTCACAAAGAATGGATGAAAATTTCCATGCCACTTGTAGAAGGGAATGTAGTATGTGCCTGTGTGATTTACACTTGTCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTGGATCATGCAAAACATTTCTGTTCTTGCACTTGGAGCAACAAAATTCTCTTCTACCGTTATGAAATCAGTGATCTGAATGTTCTTAGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAAGAGTATCTGGGATTAACTCTGAACTCTGCTGCCTCCGAGAGATCAAACCCACGTCCAGAAAATGTTAGCGGTTCAACCTGCCCTTCGCAAGAGTTGCATATGAAAAAATCTATATCCCAGACAGCAGCAAATGAATCAAAAGAGAAGCGACGTCAATTGCAGGAAATATTGAATTCATCAAAGAAAAAACAAAATGAAGTGATTTCAAGTTATTCCCAAAAGAAACAAAAGGAAGTGGTTCCGTTCCCATCCAAGAAGAAACAAAAGGAAGTGATTTCCCAGGTCCCGCAGACTTCTGGTGGCACTCACAGTTCTTATGACACTCATTCAGAAATTAAGACAGATTTGGTTCAGTCAAGCTTTGCAGAGGGTACGAAAAGAATCAATTCTGTTGGCACCAAAATTGATATGAAGATGGTTGGGAGCAAGAAAACAATTTCAAAGAAAGGAGAACCAAAAGCATCTAATGTTCCCTCAGTTACAAACGTACGTTACTTGTCTTTTCTAAAAGAACATGAGTTACTTGATGTTTCATCTGATAGTATGAGCGCCTCTTCATCATCAGATTCTGATGTTGCATAA 2589 0.3982 MMEADNDCPKYQEYKNHSVPPGFVSLSSFILRRVGNVKKNDKSSTICMKTKLETNGINAYSQGLMHRPWINMDMCNHHKPEESHTKHLPMNLPLNAGRPKGTIRGCPNCSNCVKVTARWHPEDAIREPLEETPIFHPTEEEFKDTLKYIASVRSKAETYGICRIVPPTCWKPPCFLQRENIWEKSEFVAQIQRIDGHQVQHTQEIMASSREHTKTKRKRDVKVALGPQLCKRNTSTPNNHNVEECDYESEPGPKFSLKTFKEYADVFKNQYFNYKDKKKFIGSNIKLAIRQQWEPSVENIEGEYGRIVQNPTEEIEVLCCKKLEAGVFGSGFPTVSDPVAAHAYPEYVKAGWNLNNMLSDSLLSFESPDVSCNLAPNISVGMCFSADNWKVEEHHLYSLSYIHLGEPKVWYSVPGRFAANFETIWKKYLPDLHAGKPRMQDNMEMQLSCSILKAEGIPVYRCVQYPGEFVLVFPGAYHSGFDCGFNCSEAISFAPLEWLLHGQNVIELYREQRKKTLLSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYQQNEFLTKAFNSRIKSESLKRKFLSSSLVSQRMDENFHATCRRECSMCLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKILFYRYEISDLNVLSQALDGKLSAVFKWAKEYLGLTLNSAASERSNPRPENVSGSTCPSQELHMKKSISQTAANESKEKRRQLQEILNSSKKKQNEVISSYSQKKQKEVVPFPSKKKQKEVISQVPQTSGGTHSSYDTHSEIKTDLVQSSFAEGTKRINSVGTKIDMKMVGSKKTISKKGEPKASNVPSVTNVRYLSFLKEHELLDVSSDSMSASSSSDSDVA* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1675 862 PANTHER LYSINE-SPECIFIC DEMETHYLASE 70 754 - -
Pvu1g1675 862 ProSiteProfiles JmjN domain profile. 132 173 IPR003349 -
Pvu1g1675 862 Gene3D Cupin 117 494 - -
Pvu1g1675 862 SMART JmjN_1 131 172 IPR003349 -
Pvu1g1675 862 MobiDBLite consensus disorder prediction 726 776 - -
Pvu1g1675 862 Pfam jmjN domain 133 166 IPR003349 -
Pvu1g1675 862 Pfam JmjC domain, hydroxylase 378 493 IPR003347 -
Pvu1g1675 862 Coils Coil 712 732 - -
Pvu1g1675 862 SUPERFAMILY Clavaminate synthase-like 254 536 - -
Pvu1g1675 862 MobiDBLite consensus disorder prediction 679 701 - -
Pvu1g1675 862 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 70 754 - -
Pvu1g1675 862 SMART cupin_9 346 510 IPR003347 -
Pvu1g1675 862 MobiDBLite consensus disorder prediction 727 746 - -
Pvu1g1675 862 ProSiteProfiles JmjC domain profile. 346 510 IPR003347 -
Pvu1g1675 862 Pfam C5HC2 zinc finger 601 651 IPR004198 -
Pvu1g1675 862 MobiDBLite consensus disorder prediction 759 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1675 Pvu-Chr1 42213618 42221139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1675 18 747 JUMONJI Transcription Factor Family AT1G08620 42.003 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu1g1675 JmjC 6.7e-33 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1675 - - gmx:100804864 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1675 1 42213618 42221139 Pvu1g1675 1 42213618 42221139 ECH