Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1669 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCAAGAAGAAGATCAAATTCTCATCACTTACATCAACACTTATGGCCATGCTAATTGGCGTTCACTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGCTGTAGACTCCGGTGGATAAATTATCTGAGACCAGACATCAAACGAGGCAACTTCACCCGAGAAGAAGAGGATGCTATAATCACTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGTAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCACGACCAAAAACGAAGCAAAAAACAAGCAAAGTTGGATGGGGACGCTTCCAAAACCAATTACCAAGACGCCAAACTAGAACAACAAGATGAGCCCGTGAACAACATGCACAGTCATGCATCAACCAAAGAAGATAATGGCACAGAGGATATGCCACTTTCTCCTCCCCAATGTTCTAGCGACATGTCTTCCCTCACCACTAGTGACAACAATAGCAGCATTAATAATAATACTAATAACTGTGACATGTCCTTGCACGTTAATGATATCGACACACCGGAGAACAATCTTGCATTGGACGAGGATTTCTGGTCTGAAGTTTTGTCTTCTGATGATAATTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGGTCGGTTTGAACCGATGTCTAGCAAAGAAGGGGTGCTTATAGATGGTAGTTCGTCAAGTATGTGCGATGGCATGGACTTTTGGTGCAACGTTTACGCTAGAGCTGAGGAATTCAACCAGTTATTGGAATTATGA 879 0.4425 MGRAPCCEKMGLKRGPWTQEEDQILITYINTYGHANWRSLPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIITLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYRQSHDQKRSKKQAKLDGDASKTNYQDAKLEQQDEPVNNMHSHASTKEDNGTEDMPLSPPQCSSDMSSLTTSDNNSSINNNTNNCDMSLHVNDIDTPENNLALDEDFWSEVLSSDDNSGETSGFPSIDYGRFEPMSSKEGVLIDGSSSSMCDGMDFWCNVYARAEEFNQLLEL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1669 292 Gene3D - 7 67 - -
Pvu1g1669 292 Gene3D - 69 154 - -
Pvu1g1669 292 CDD SANT 69 112 IPR001005 -
Pvu1g1669 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu1g1669 292 CDD SANT 16 61 IPR001005 -
Pvu1g1669 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu1g1669 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu1g1669 292 MobiDBLite consensus disorder prediction 118 143 - -
Pvu1g1669 292 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 285 - -
Pvu1g1669 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu1g1669 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 285 - -
Pvu1g1669 292 MobiDBLite consensus disorder prediction 175 199 - -
Pvu1g1669 292 MobiDBLite consensus disorder prediction 144 164 - -
Pvu1g1669 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu1g1669 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu1g1669 292 SMART sant 13 63 IPR001005 -
Pvu1g1669 292 SMART sant 66 114 IPR001005 -
Pvu1g1669 292 MobiDBLite consensus disorder prediction 112 199 - -
Pvu1g1669 292 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1669 Pvu-Chr1 42151743 42153707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1669 1 292 MYB Transcription Factor Family AT2G31180 47.973 5.70e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g1669 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1669 K09422 - gmx:100775603 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1669 1 42151743 42153707 Pvu7g2815 7 51164353 51166600 PCT
Pvu7g1984 7 43061894 43062954 Pvu1g1669 1 42151743 42153707 PCT