Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1664 ATGGATTTAGATTTTGATTCTCATTTTTTTTCAAACCAAAACCTTAACTTCTTCGAAAACGCTGGAGACCCTTTTTCCTGGGACTACAATTTTGACGACATCTTCAACTTCAGTGACGACCAAACCAAGGAATCATCTTCCACGTCCAACGTTTCCGGCTCTGTGGGCAGCCTCGAGTTACAAGAAGTATCGTCCAACAACACAACCTACGAAGAAGAACCCAAAGAAACAGAGCCAGCGCCGGCGGCGCCAGCGAAGGAGGGTAGGGTGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATTCGACCCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCGGCTCTGGCTTATGACCAGGCGGCGTTCTCGACAAGGGGGTCTCTGGCGGTGCTGAATTTCCCGGAAGAAGTGGTGAGAGAGTCTCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGCTCCTCCCCTGTTTTGGCGCTCAAGAGAAAGCACACTATGAGGAGAAAGTCCAGTTTGAAGAAGAAGAAAAGTAAAAACGATGGCAGGGAGCAGTTGGAGTTCTGCGCCACTTCTCAGAATGTGCTGGTGTTCGAGGATTTGGGCGCTGAGTATCTAGAACAGCTTTTGAGTTTGACTTATTAG 684 0.5102 MDLDFDSHFFSNQNLNFFENAGDPFSWDYNFDDIFNFSDDQTKESSSTSNVSGSVGSLELQEVSSNNTTYEEEPKETEPAPAAPAKEGRVYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRRKSSLKKKKSKNDGREQLEFCATSQNVLVFEDLGAEYLEQLLSLTY* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1664 227 MobiDBLite consensus disorder prediction 42 68 - -
Pvu1g1664 227 MobiDBLite consensus disorder prediction 42 89 - -
Pvu1g1664 227 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Pvu1g1664 227 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Pvu1g1664 227 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Pvu1g1664 227 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Pvu1g1664 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 224 - -
Pvu1g1664 227 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Pvu1g1664 227 PANTHER DNA-BINDING DOMAIN 13 224 IPR044808 GO:0003700|GO:0009873
Pvu1g1664 227 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Pvu1g1664 227 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Pvu1g1664 227 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1664 Pvu-Chr1 42037682 42038650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1664 60 223 AP2-EREBP Transcription Factor Family AT3G23240 53.659 6.55e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1664 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1664 K14516 - gmx:100801682 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1664 1 42037682 42038650 Pvu1g1664 1 42037682 42038650 ECH
Pvu1g1664 1 42037682 42038650 Pvu7g1989 7 43116184 43117296 PCT