Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1662 ATGGGTTCCCCTTTCTTTGAGCTTTCAGATTGGGGCACATTGATGGAGCCTTCTGATATTTTGTTTGAACCATTTTCAAGCAAAGATATTGGTTATGACCCTTTCCATGACTGTCTTTCCTTTGATATGATTGATGACTCAAGGGATCCACAAGAACCAAGTGAAGTGATTGAAGCTATGGAAGTGGTGCAAACGGAGATCAGAGACGCGACGAGGAAAGGTACGAGGGTTTGGCTTGGAACGTTTGGTAATGCAGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTGTGATGAGAGGAACAAGTGCAGTGCTGAATTTTCCTGTCAAAAGGGTTATGGAGTCTTTACAAGAGCTGAATTATTTTGGTTGCAGACAAGGGTGCTCTCCGGCATTGGAACTCAAAAAGAAGCACAACATGCGACGACAATTATCCTCAAAGTCTAAGGAAACTAAAACCAAACTGGAATTGGAAGAATCGAGTGTTTTGCAGGACTTGGGAGCTCAATAG 513 0.4288 MGSPFFELSDWGTLMEPSDILFEPFSSKDIGYDPFHDCLSFDMIDDSRDPQEPSEVIEAMEVVQTEIRDATRKGTRVWLGTFGNAEEAALAYDQAAFVMRGTSAVLNFPVKRVMESLQELNYFGCRQGCSPALELKKKHNMRRQLSSKSKETKTKLELEESSVLQDLGAQ* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1662 170 Pfam AP2 domain 71 101 IPR001471 GO:0003700|GO:0006355
Pvu1g1662 170 SUPERFAMILY DNA-binding domain 66 110 IPR016177 GO:0003677
Pvu1g1662 170 Gene3D AP2/ERF domain 63 111 IPR036955 GO:0003700|GO:0006355
Pvu1g1662 170 CDD AP2 66 110 IPR001471 GO:0003700|GO:0006355
Pvu1g1662 170 SMART rav1_2 64 115 IPR001471 GO:0003700|GO:0006355
Pvu1g1662 170 MobiDBLite consensus disorder prediction 140 160 - -
Pvu1g1662 170 PANTHER DNA-BINDING DOMAIN 65 169 IPR044808 GO:0003700|GO:0009873
Pvu1g1662 170 ProSiteProfiles AP2/ERF domain profile. 40 109 IPR001471 GO:0003700|GO:0006355
Pvu1g1662 170 MobiDBLite consensus disorder prediction 140 170 - -
Pvu1g1662 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 65 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1662 Pvu-Chr1 41988449 41989014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1662 66 170 AP2-EREBP Transcription Factor Family AT3G23240 55.752 3.96e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1662 AP2 9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1662 K14516 - gmx:100800600 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1662 1 41988449 41989014 Pvu6g1113 6 22259920 22260531 ECH
Pvu1g1662 1 41988449 41989014 Pvu7g1310 7 27274067 27275018 ECH
Pvu1g1662 1 41988449 41989014 Pvu1g1662 1 41988449 41989014 ECH
Pvu1g1662 1 41988449 41989014 Pvu7g1994 7 43194246 43194881 PCT