Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1661 ATGAATTTTTATTCTTCATTTTCATACCAAAGTCTAGAATCGCATCTCAACTCATGGGAAGAGTTGTTTTCGTTCAACAACCTGCCCTTGAATAATGCAACAAATGCATCGTCCTTATTGGACTCCAACACCTCTGATACTACATACGATGGTTCAAATCCACAGCCTCTATCTGTAGCCCCAACAAAGAAAGAGAAGAGACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATGTGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATCGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCCGCACAAGTGGTGATGGAGTCCCTCAAAGACATGGGTTTCAAGGCACTGAGAAATAGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGCTAGCAGAAATGGTGGTAAAAGGGTTAAAAGGGGTTGCAGCAAAGGGAAATTTGATTCTACTACTGAAACTGTGTTGGTGTTGGAAGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCAGGTTCTTGGTGA 636 0.4308 MNFYSSFSYQSLESHLNSWEELFSFNNLPLNNATNASSLLDSNTSDTTYDGSNPQPLSVAPTKKEKRPYRGVRRRPWGKCAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQVVMESLKDMGFKALRNSVSPLLELKRMHVMRTKSRASRNGGKRVKRGCSKGKFDSTTETVLVLEDLGPEYLEQLLTFTSPGSW* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1661 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 51 206 - -
Pvu1g1661 211 CDD AP2 69 125 IPR001471 GO:0003700|GO:0006355
Pvu1g1661 211 Pfam AP2 domain 69 114 IPR001471 GO:0003700|GO:0006355
Pvu1g1661 211 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Pvu1g1661 211 MobiDBLite consensus disorder prediction 39 59 - -
Pvu1g1661 211 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Pvu1g1661 211 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Pvu1g1661 211 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Pvu1g1661 211 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Pvu1g1661 211 PANTHER DNA-BINDING DOMAIN 51 206 IPR044808 GO:0003700|GO:0009873
Pvu1g1661 211 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Pvu1g1661 211 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1661 Pvu-Chr1 41973984 41974619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1661 17 211 AP2-EREBP Transcription Factor Family AT3G23240 44.221 2.04e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g1661 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1661 K14516 - gmx:100818907 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1661 1 41973984 41974619 Pvu1g1661 1 41973984 41974619 ECH
Pvu1g1661 1 41973984 41974619 Pvu7g2811 7 51127595 51128470 PCT
Pvu7g1995 7 43227132 43227770 Pvu1g1661 1 41973984 41974619 PCT