Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1660 ATGGAGGACTTAAAGGAAAAGGTGATGAGTGAAGGGGAAGCAAAGAAAATTAAGTATAGAGGAGTAAGGAGGAGGCCATGGGGAAAGTTTGCATCAGAGATTAGAGATTCAGCAAGACATGGAGCTCGCGTGTGGCTTGGGACCTTTAACACAGCTGAGGAAGCAGCAAGAGCTTATGATCGTGCTGCCTTTGAAATGAGAGGTACTATGGCCATTCTCAACTTCCCACATGAACACCAACCTTGCAATGTGGCTACTCTTAGCAACAAGTGCTCATCATCTAAAACTGAACTTGGTAAACAAGTTGTGGTATTGGAGTGTCTGGAAGATAAATTGTTAGAGGAACTCCTTGATTGTGATGACAAAACCATCAATCAAAACTTGGGCAACTAG 393 0.4326 MEDLKEKVMSEGEAKKIKYRGVRRRPWGKFASEIRDSARHGARVWLGTFNTAEEAARAYDRAAFEMRGTMAILNFPHEHQPCNVATLSNKCSSSKTELGKQVVVLECLEDKLLEELLDCDDKTINQNLGN* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1660 130 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Pvu1g1660 130 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Pvu1g1660 130 PANTHER DNA-BINDING DOMAIN 8 87 IPR044808 GO:0003700|GO:0009873
Pvu1g1660 130 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Pvu1g1660 130 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Pvu1g1660 130 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Pvu1g1660 130 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Pvu1g1660 130 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pvu1g1660 130 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Pvu1g1660 130 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1660 Pvu-Chr1 41963965 41964626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1660 15 122 AP2-EREBP Transcription Factor Family AT3G23230 50.000 2.09e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g1660 AP2 7.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1660 - - gmx:100800069 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1660 1 41963965 41964626 Pvu1g1660 1 41963965 41964626 ECH
Pvu1g1660 1 41963965 41964626 Pvu7g2487 7 48138008 48139162 PCT
Pvu7g1996 7 43237645 43238058 Pvu1g1660 1 41963965 41964626 PCT