Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1659 ATGGCACTCAACCACAACCCCTCTTACAAGCTTCTACATCAAGCTCCCCCACCCATCAAAACTCATGCTACCACAATCCATTACACACCACAACCTGCTTCAAATTCTGCTTCTGCTTTACCTATACTTGCCATTATTGTGCCCAGCATCTTTGTCACTGTTTTCATACTCATCACCTACTTAACACTTCTCACCAAATTCTTCTCAAATTGGCACATTCTTAACCCCTTGAGATGGATTTTCACCTTACTTATCCCTCAACATGAAGATCAAGACCCCTTCATGGCACTCTCTCCAAGGATGTGGAGCCAAGGACTTGATGAATCTGCCATCAGAGAAATCCCGACACTTCAATTCACAAAAGGAGATGTTGAAAAGAATCAAAGTGCGTATGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGATCATGATATGCTAAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTTCACTGCATTGACATTTGGCTTCAAACCAATGCCAATTGCCCTCTTTGTAGATCAAACATTATTTCAGGCAACACACACTGTCCAAGGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACGTGGGCAGTGATGAGGATTTTGTTGTCATTGAACTTGGGGGAGGAGAACACAGGGAAGCACTGCCGCAGATGCAACAAGAAAGAAGTGACTCAAGGGAAACAATAGTAGAGAGTAGATGCCACTCTATTATAAGGAAGTGTCATCATGTTTCCATCATGGGAGATGAGTGCATTGATGTTGGGAAGAAAGATGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACGATAGGCAAGTTTACCTGGATTTTCAAATCATCATGCAACAGAATAATAGGCATCTAAATCAGGCTAGTGCCAATGAAGATTGCAATAGCTGA 954 0.4203 MALNHNPSYKLLHQAPPPIKTHATTIHYTPQPASNSASALPILAIIVPSIFVTVFILITYLTLLTKFFSNWHILNPLRWIFTLLIPQHEDQDPFMALSPRMWSQGLDESAIREIPTLQFTKGDVEKNQSAYGCVVCLTEFQDHDMLKVLPICKHAFHFHCIDIWLQTNANCPLCRSNIISGNTHCPRDHIIAPSSSPQDSQLLSYVGSDEDFVVIELGGGEHREALPQMQQERSDSRETIVESRCHSIIRKCHHVSIMGDECIDVGKKDEQFSIQPIRRSFSMDSANDRQVYLDFQIIMQQNNRHLNQASANEDCNS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1659 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
Pvu1g1659 317 Pfam Ring finger domain 133 175 IPR001841 -
Pvu1g1659 317 SUPERFAMILY RING/U-box 111 181 - -
Pvu1g1659 317 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 317 - -
Pvu1g1659 317 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Pvu1g1659 317 PANTHER RING-H2 FINGER PROTEIN ATL16 1 317 IPR044600 GO:0016567|GO:0016740
Pvu1g1659 317 CDD RING-H2_PA-TM-RING 133 175 - -
Pvu1g1659 317 SMART ring_2 133 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1659 Pvu-Chr1 41960337 41961290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1659 33 306 C3H Transcription Factor Family AT1G04360 41.748 3.05e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1659 K19041 - gmx:100809883 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1659 1 41960337 41961290 Pvu1g1659 1 41960337 41961290 ECH
Pvu1g1659 1 41960337 41961290 Pvu7g2808 7 51098381 51099334 PCT
Pvu7g1998 7 43248733 43250390 Pvu1g1659 1 41960337 41961290 PCT