LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1652	ATGGCTTCTGCAAGTGGAAATGGTAGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGACGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCTGCCATACATAAAGTGTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCCGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTTGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGACTCAGAACCTGATGGAGTCCAGGAACATGGAGAATAATCATCAGTGGCCAGGGAATCAAAGTGTTGCAGGACAACCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGATTTCCAAATCCATGCTAAGGAAAGAGGATACAACAACAATGACTTAGGTGAGCTGCAAGAACTGGCACTCAGAATGATGAGGAACTGA	639	0.4632	MASASGNGSSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLTQNLMESRNMENNHQWPGNQSVAGQPMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFQIHAKERGYNNNDLGELQELALRMMRN*	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g1652	212	Pfam	Lateral organ boundaries (LOB) domain	16	114	IPR004883	-
	Pvu1g1652	212	Coils	Coil	96	116	-	-
	Pvu1g1652	212	ProSiteProfiles	LOB domain profile.	15	117	IPR004883	-
	Pvu1g1652	212	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 16	4	211	-	-
	Pvu1g1652	212	PANTHER	LOB DOMAIN CONTAINING PROTEIN	4	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1652	Pvu-Chr1	41835988	41837718	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1652	3	212	AS2 family	AT2G42430	53.689	1.13e-79	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Pvu1g1652		LOB	8.2e-37	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g1652	1	41835988	41837718	Pvu1g1652	1	41835988	41837718	ECH
	Pvu1g1652	1	41835988	41837718	Pvu7g2008	7	43360166	43361521	PCT