Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1652 ATGGCTTCTGCAAGTGGAAATGGTAGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGACGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCTGCCATACATAAAGTGTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCCGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTTGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGACTCAGAACCTGATGGAGTCCAGGAACATGGAGAATAATCATCAGTGGCCAGGGAATCAAAGTGTTGCAGGACAACCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGATTTCCAAATCCATGCTAAGGAAAGAGGATACAACAACAATGACTTAGGTGAGCTGCAAGAACTGGCACTCAGAATGATGAGGAACTGA 639 0.4632 MASASGNGSSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLTQNLMESRNMENNHQWPGNQSVAGQPMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFQIHAKERGYNNNDLGELQELALRMMRN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1652 212 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Pvu1g1652 212 Coils Coil 96 116 - -
Pvu1g1652 212 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Pvu1g1652 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 4 211 - -
Pvu1g1652 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1652 Pvu-Chr1 41835988 41837718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1652 3 212 AS2 family AT2G42430 53.689 1.13e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu1g1652 LOB 8.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1652 K13944 - gmx:100801508 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1652 1 41835988 41837718 Pvu1g1652 1 41835988 41837718 ECH
Pvu1g1652 1 41835988 41837718 Pvu7g2008 7 43360166 43361521 PCT