Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1647 ATGGACTTAAACTACCCACAAGACCATGATCTGGTGGGAACTGGGAGATCCTACGAGTGCATCTTCTGCAAGAGAGGCTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGGGCCAACAAGACCAAACCCACTTTCCCTCCTCCTCCTTCAACTTCTAACAAACCTGATGGAATCACCAACTATGCAGATCTCGTCTTCCATTCACAAATTCCAACCCACTCCCCTTCTCCTGATGCTAATAGCTTCCGTGATGTTTGTTTTTCAGCCACTGCACTGAGTGTTAGACCTTCCCATGGTGAGGTTTTGTGTGCAGAAAAAAATCAACTGGGACACGTGTTTGTGCAGGATTGGAGGACCAGAAATTTTAGCTTCTACACTAATCCTTTGTGTTTTCATGAAATGAACAAGTTTGAAGACACTGAAGAGAATGGCCTGGATTTGGAGCTGAGGTTGGGTCATCATCCATAG 489 0.4519 MDLNYPQDHDLVGTGRSYECIFCKRGFTTAQALGGHMNIHRKERANKTKPTFPPPPSTSNKPDGITNYADLVFHSQIPTHSPSPDANSFRDVCFSATALSVRPSHGEVLCAEKNQLGHVFVQDWRTRNFSFYTNPLCFHEMNKFEDTEENGLDLELRLGHHP* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1647 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Pvu1g1647 162 MobiDBLite consensus disorder prediction 41 64 - -
Pvu1g1647 162 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Pvu1g1647 162 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 7 162 - -
Pvu1g1647 162 Gene3D Classic Zinc Finger 9 60 - -
Pvu1g1647 162 PANTHER OS07G0101800 PROTEIN 7 162 - -
Pvu1g1647 162 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Pvu1g1647 162 Pfam C2H2-type zinc finger 18 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1647 Pvu-Chr1 41789351 41790573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1647 18 79 C2H2 Transcription Factor Family AT5G43540 48.387 3.03e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1647 - - gmx:102664910 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1647 1 41789351 41790573 Pvu1g1647 1 41789351 41790573 ECH
Pvu1g1647 1 41789351 41790573 Pvu7g2012 7 43407796 43408593 PCT