Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1646 ATGGAAGGAAACTATCTGACCAGAAACACGCATAAAGGGGATAGGTTTGGCTTTGAGGAGCTTTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGTAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTCCTTACCCTCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTGTGCCTAATCACACTCATCTTTCACCCTCCCCTCCATCGTCGTGTCTATCTAACAATAACCTTTTGAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTTTGTCGTTTTCACTGAACCCGCCGGTTTCTCTCAATGGAGACAAGAAACCAAGACTCGCATCTTCTCAGTTTCTTCCTCTTTCGGTTTCTCAGGAAAATGAGGAAATTAAGATTTGTAAGAACAAAGAGATTGGTTTAGAAGTTGAAGAAGAACAGGGTTGTGCAATAGGGGAGGAATGCAAGGGTTGCAAGAGTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTTATCAAACAACCAGAGAAGTTAGATTTGGAGCTACGACTGGGGCACTAA 633 0.436 MEGNYLTRNTHKGDRFGFEELSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWVSECPKPNPSIVPNHTHLSPSPPSSCLSNNNLLNCAHCSPLYSPSLTLSFSLNPPVSLNGDKKPRLASSQFLPLSVSQENEEIKICKNKEIGLEVEEEQGCAIGEECKGCKSSEHNIKLELGIGFIKQPEKLDLELRLGH* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1646 210 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Pvu1g1646 210 Gene3D Classic Zinc Finger 21 74 - -
Pvu1g1646 210 SMART c2h2final6 32 54 IPR013087 -
Pvu1g1646 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pvu1g1646 210 Pfam C2H2-type zinc finger 32 56 - -
Pvu1g1646 210 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 17 210 - -
Pvu1g1646 210 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Pvu1g1646 210 PANTHER OS07G0101800 PROTEIN 17 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1646 Pvu-Chr1 41773583 41774791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1646 24 209 C2H2 Transcription Factor Family AT3G23130 41.799 1.26e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1646 zf-C2H2_6 6.9e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1646 1 41773583 41774791 Pvu7g2013 7 43430129 43431188 PCT