Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1635 ATGCCTGCCCACGCGCTTCCAATCCACAAACACTCTCCGCCGCCGCCCAGAGAGGTCCATTTCAGAGGCGTTCGCAAGCGTCCCTGGGGCCGTTTCGCCGCCGAGATCCGCGATCCTTGGAAAAAGACCCGAAAGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACCGCAGCCAGAACGCTCCGAGGTCCCAAGGCCAAAACCAACTTCACCTACGTTGTTGCTCCCCCGGTGCTCGCTGCCCCTGAGTCCCAGGCCCAAGCCCATGACCGACTCGCCAGACCGGTCGAGTTCTGGGGTCTGCCTTTGTTTTTCACTACGGAAGCAGCTTCCGGAGCGCCGGTGAGGTCGGAGTACAAGGGTTACAAGTTGGAGAACATTGCGGGTTTTGTGGTTACCAAGGAGGAGGATAAGAAGCCGTTTTTGTTCGACCTTAATCTGCCGGCGCCACTCTTCTAA 477 0.5975 MPAHALPIHKHSPPPPREVHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPPVLAAPESQAQAHDRLARPVEFWGLPLFFTTEAASGAPVRSEYKGYKLENIAGFVVTKEEDKKPFLFDLNLPAPLF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1635 158 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Pvu1g1635 158 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Pvu1g1635 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 94 - -
Pvu1g1635 158 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Pvu1g1635 158 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Pvu1g1635 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 94 - -
Pvu1g1635 158 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pvu1g1635 158 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Pvu1g1635 158 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Pvu1g1635 158 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1635 Pvu-Chr1 41586154 41586630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1635 17 76 AP2-EREBP Transcription Factor Family AT5G44210 88.333 3.74e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1635 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1635 K09286 - gmx:100816599 248.825