Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1633 ATGTCGAATCAGGTGGCGAAGGTGCGGAGGAACACGATTGTAGCATGCATGACTTGCCCACTTTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTATGGATGAGGAATTGGAAAGTTGTCCAATATGCGGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTGACCTCAATACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTCAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCGGTCTACTAGTTTTTCCATTGAAAAGCCCATTAAGAAAGAGGAAGAGTTACTGGAAGATCATCCTGGGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCCGCACCCAACAAAGGATCAGAGAATGGTGCCGAACCATGGGATACAAAATTGGATCTCTGGAAGCCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTCTGATGCTAAATTAGAAATCACTCAAGTAAATGAGAGCGAATCTCAAGTGCAGAAAGCTAAAACTAAGGAAAGTAAACGTAAGGCAAAAGTTGAAGATGAAAAGATTAGCCCTTATCCTGCTTCTTCAGATACAGCAAAACCCAATAAACTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCAGGAGAATCAAGCATATCACCCCAAGCTGTGCTGGATTCTGCCACTAGTAGTAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGGAGGAGATGCACCCTTGCCGCAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGTAGCCTACCAGTCTCATTCATCCAAAAATACATAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACATTGCGTCTATATAATTTGGTTGAGTTGTGGCTGGATACAGCATCCACGTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTTTTGGCTTATGCTCGGAAGCCTCCACACCCTTGA 1290 0.4403 MSNQVAKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKIMDEELESCPICGIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSIPLPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSTSFSIEKPIKKEEELLEDHPGSSSSPETSNKFAQNSGQSMSPCEGSQSAPNKGSENGAEPWDTKLDLWKPLNCLVEVASRSKSFKSHVQGSDAKLEITQVNESESQVQKAKTKESKRKAKVEDEKISPYPASSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSATSSRLSRTGPIWFSLVASENQGGDAPLPQIPASYVRIKDGSLPVSFIQKYIMKKLDLTSETEVEIKCMGQPVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKPPHP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1633 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 IPR044807 GO:0004842
Pvu1g1633 429 SUPERFAMILY RING/U-box 13 83 - -
Pvu1g1633 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Pvu1g1633 429 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Pvu1g1633 429 SMART ring_2 19 59 IPR001841 -
Pvu1g1633 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 - -
Pvu1g1633 429 MobiDBLite consensus disorder prediction 149 164 - -
Pvu1g1633 429 MobiDBLite consensus disorder prediction 112 205 - -
Pvu1g1633 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pvu1g1633 429 MobiDBLite consensus disorder prediction 165 198 - -
Pvu1g1633 429 MobiDBLite consensus disorder prediction 112 147 - -
Pvu1g1633 429 MobiDBLite consensus disorder prediction 251 271 - -
Pvu1g1633 429 MobiDBLite consensus disorder prediction 243 310 - -
Pvu1g1633 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1633 Pvu-Chr1 41544280 41551058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1633 3 348 C3H Transcription Factor Family AT2G30580 55.172 2.75e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1633 K16277 - gmx:100793731 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1633 1 41544280 41551058 Pvu1g1633 1 41544280 41551058 ECH
Pvu1g1633 1 41544280 41551058 Pvu7g1824 7 41353310 41358499 PCT