Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1625 ATGGAGGTTGGCCTGAAGAAGGAGAACATGGGGTTTGAAGAAACTGAGCTAAGGCTTGGACTGCCTGGAAACGCTGCCTCAGCCACTGAAGAAGTGCTAAGGAAGAGAGGATTCTCTGAGACTGAAACTCAGGATGACACTGCCACAGTGGATTTGATGCTTAATCTTTCATCCAAGGAACCAACCACTGGAGCAGATCCAACTCATAAGCACAACACCTTGCCTAAGGAGAAGACCCTTCTGCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTACAGAAGAGTGTTGGAGAAGAGAGTGAAAAGAACAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTGCGCAAAGTGGACTTGAAGATGTATCAGAGTTACCGCGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAACTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTACGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATTATGAAAGGAAAGGAGGCTATTGGCCTTGGTCTTGCACCAAGAGCCATGGCAAAAAGCAAGAACAGGAGCTAG 741 0.4791 MEVGLKKENMGFEETELRLGLPGNAASATEEVLRKRGFSETETQDDTATVDLMLNLSSKEPTTGADPTHKHNTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYQSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1625 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 237 IPR003311 GO:0005634|GO:0006355
Pvu1g1625 246 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 237 - -
Pvu1g1625 246 MobiDBLite consensus disorder prediction 57 94 - -
Pvu1g1625 246 Pfam AUX/IAA family 14 233 IPR033389 -
Pvu1g1625 246 ProSiteProfiles PB1 domain profile. 126 226 IPR000270 GO:0005515
Pvu1g1625 246 SUPERFAMILY CAD & PB1 domains 117 225 - -
Pvu1g1625 246 Gene3D - 120 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1625 Pvu-Chr1 41450822 41453993 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1625 116 229 B3 DNA Binding Superfamily AT4G23980 33.333 7.89e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu1g1625 AUX_IAA 7.3e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1625 K14484 - gmx:100810013 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1625 1 41450822 41453993 Pvu1g1625 1 41450822 41453993 ECH