Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1624 ATGGGGAGCTATCAAACTGAGCTCAATCTTAAGGCCACAGAGTTGAGGTTGGGATTGCCTGGGAGTGATGAGCCTCAAGAGATACGTTCATGCAGTGGCTCTGTTGTTAGAAGCAGCAACAAGAGATCTTCACCAGAATCCAGTGTGGAAGAATCCAGGTGCAAAACCAACACTAACTCTGACACTTCTGACTCCACAACCACAAGTGATCACGACCAAGACACTGTCCAGCCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAGAAGGTGGAGCAGGGCGATGGAACTGGAATGTACGTAAAAGTCAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACCAAAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGATACAACGGATCTGAATTCGCCCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTATGA 618 0.4579 MGSYQTELNLKATELRLGLPGSDEPQEIRSCSGSVVRSSNKRSSPESSVEESRCKTNTNSDTSDSTTTSDHDQDTVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYVKVSMAGAPYLRKIDLKVYQSYPELLMALQNLFKCTFGEYSEREGYNGSEFAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1624 205 MobiDBLite consensus disorder prediction 50 76 - -
Pvu1g1624 205 Gene3D - 104 205 - -
Pvu1g1624 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 203 IPR003311 GO:0005634|GO:0006355
Pvu1g1624 205 PANTHER AUXIN-INDUCED PROTEIN 3 203 - -
Pvu1g1624 205 ProSiteProfiles PB1 domain profile. 109 201 IPR000270 GO:0005515
Pvu1g1624 205 MobiDBLite consensus disorder prediction 17 80 - -
Pvu1g1624 205 Pfam AUX/IAA family 13 203 IPR033389 -
Pvu1g1624 205 MobiDBLite consensus disorder prediction 27 43 - -
Pvu1g1624 205 SUPERFAMILY CAD & PB1 domains 105 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1624 Pvu-Chr1 41428482 41429980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1624 100 202 B3 DNA Binding Superfamily AT2G46530 35.922 4.82e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu1g1624 AUX_IAA 1.5e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1624 K14484 - gmx:100792134 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1624 1 41428482 41429980 Pvu1g1624 1 41428482 41429980 ECH
Pvu1g1624 1 41428482 41429980 Pvu7g1816 7 41296938 41298764 PCT