Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1618 ATGGAGTCTCACGGCGGAGGACCCCTTCGTTCCCGCAGTTCCCAGTCCCCTTCTCCTTCGCACTCCGCCTCAGCCTCCGCCACATCCTCCATCCACAAGCGCAAGCGCGCGTCTGAGGACCACGTGCCTCCCTTCCCGCCCTCCTCCTTCTCCGCCGACACGCGCGACGGCGCCCTCACCTCCAATGACGACCTGGAGAGCATCTCCGCCCGAGGCGCCGACTCCGACTCAGACGACGACTCCGAGGACGCCGTCGTCGACGATGACGAGGACGACTACGACAACGATTCCTCCATGCGCACCTTCACCGCCTCCAGACTCGGTAATCCTCCCTCCGCTCCCCGCAATTCAAAGCTCAAGACTGATAACTCCACCGTCAAAATTGAGAACTCCGACGGCGCAAAAGACCCCGTAAGCGCCGGAGCCGGTGCCGCCGAGGCCGTTGGATCCGTCCCTGGCATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACGAGTGGGGCTTACACAGCTCGGGAAGAGAGTCTCAAGAAGGAGGAGGAAGCGGGAAGGCTTAAATTCGTATGCCATTCAAACGATGGTGTTGATGAGCATATGGTCTGGTTGATTGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGGCTTGTCATGGATAGGAGCCACAAGTCTGTAATGGTTATCAGGCGAAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCTAGCCAGAGGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGTGATGTGGATGGGCTGACACATTTTCTCACATATGCTGACAACAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTATGACGGAGGAATTCTCATGGAATGCAAGATAGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCTATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATAGTCTATACCGGAATTGATTTTCAGAAGAAAGAAGCTGGCATTCCGAAAAAAATTATTGATGACATCCCCGGTTTGAGGGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAAGTCTAAATGTCTCTACTGACAATACCACTAATCAAAAACATTTGTCTGGTTTTATGCGATCACTTCTAAAGTCAATGCATGATCATGCTGACGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTTCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCCAAGAGGGTGGAGTCAGAGCTATATTATGTAACGTTTGAGATGTTTGTTGCTGATGTCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTGCTACAAGGTTAGAATCCCACTTTCAAAGCAAAGTACAAGCGGGTCTCCAGCCTGGTTCCAAAATTCAGTAG 1620 0.4809 MESHGGGPLRSRSSQSPSPSHSASASATSSIHKRKRASEDHVPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYDNDSSMRTFTASRLGNPPSAPRNSKLKTDNSTVKIENSDGAKDPVSAGAGAAEAVGSVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCHSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYTGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRSLNVSTDNTTNQKHLSGFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESELYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRLESHFQSKVQAGLQPGSKIQ* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1618 539 CDD NAT_SF 237 291 - -
Pvu1g1618 539 SMART bromo_6 424 533 IPR001487 GO:0005515
Pvu1g1618 539 SUPERFAMILY Bromodomain 418 529 IPR036427 GO:0005515
Pvu1g1618 539 PRINTS Bromodomain signature 446 459 IPR001487 GO:0005515
Pvu1g1618 539 PRINTS Bromodomain signature 460 476 IPR001487 GO:0005515
Pvu1g1618 539 PRINTS Bromodomain signature 495 514 IPR001487 GO:0005515
Pvu1g1618 539 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 205 349 IPR016181 -
Pvu1g1618 539 MobiDBLite consensus disorder prediction 98 130 - -
Pvu1g1618 539 MobiDBLite consensus disorder prediction 53 68 - -
Pvu1g1618 539 Pfam Bromodomain 436 518 IPR001487 GO:0005515
Pvu1g1618 539 PANTHER GH11602P 3 539 IPR037800 GO:0004402
Pvu1g1618 539 CDD Bromo_gcn5_like 434 530 - -
Pvu1g1618 539 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 197 344 IPR000182 GO:0016407
Pvu1g1618 539 PANTHER BNAC04G26160D PROTEIN 3 539 - -
Pvu1g1618 539 ProSiteProfiles Bromodomain profile. 443 514 IPR001487 GO:0005515
Pvu1g1618 539 MobiDBLite consensus disorder prediction 1 141 - -
Pvu1g1618 539 MobiDBLite consensus disorder prediction 76 95 - -
Pvu1g1618 539 Gene3D - 412 533 IPR036427 GO:0005515
Pvu1g1618 539 Pfam Acetyltransferase (GNAT) family 237 315 IPR000182 GO:0016407
Pvu1g1618 539 ProSitePatterns Bromodomain signature. 448 506 IPR018359 -
Pvu1g1618 539 MobiDBLite consensus disorder prediction 8 31 - -
Pvu1g1618 539 Gene3D - 186 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1618 Pvu-Chr1 41362979 41370307 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Pvu1g1618 Bromodomain 8.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1618 K06062 - gmx:100813942 963.37