Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1610 AAAAAGAGATGGCGTTTTGCTTACACAGCAATTTATTCTAGGCGAGTCATGCTTGCCTTGGCCAAAGAAGTCATATCAAAGAGAAATACGAACACCCATCCTTTCTCTAAACTCTTCCAAACCCAATCTTCAAGTCGCAGCAGTACTCTTGATATCATCGAGCCCCTGATTCCGCGTAATGGGACCAATCATTATTCTTTGGTTCCTGACGTTGACAAGGTCAGGATTGCTAGTATGGTTAAGGACAAAAACTTGTTAGCCTTTGCAGAGTTTGGAGGAGTTGAAGGTGTTGCAAACATTCTTGGAGCCATTCCAGAAAAGGGAATTACTGGCAGCCATGATGATGTTGCCAAACGTATTGAAGTATTTGGTTCGAACACTTACCAGAGGCCACCGCCTAAGTTTTTCATGAGCTTTGTAGTGGAAGCATTCAATGATACTACTATTCTGATCCTTCTTGTTTGCGCCGGTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGCCCGGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTCTAGCAGTGTTTCTGGTGGTGGTTGTGACTGCACTAAGCAACATCAGACAAGAGAGACAGTTTGACAAATTGTCTAAGATAAGCAACAACATCAAAGTAGAAGTTGTGAGAAATGGAAGGCCAGAGCAAATATCCATCTTTGATGTTGTTGTGGGAGATATTGCATCCCTTAAGATTGGTGACCAGATTCCAGCTGATGGACTGTTCTTGAGTGGCCATTCTTTGCTAGTGGATGAATCAAGTATGACAGGTGAGAGCGACCATGTAGAAATTGAGCCTTCAAAAAGCCCCTTCTTGCTGTCTGGTGCAAAAGTGGTGGATGGCTATGGTCAGATGCTAGTGACATCTGTGGGAACTAACACAGCATGGGGTGAAATGATGAGCTCCATATCGCGAGACACCAATGAAAGGACACCATTACAGGCTCGCCTTGATAAGTTAACCTCTTCTATTGGAAAGTTCCAGGGGAGTAAAACTGATATAAACGACATTTTCAATGCCGTAGTTAGGATTGTTGCTACTGCAGTGACTATTGTGGTGGTGGCAATCCCAGAGGGTCTTCCATTGGCTGTCACTCTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGACCAAGCAATGGTGAGGAAACTTTCTGCTTGCGAAACCATGGGGTCAGCTACAGTTATTTGCACGGATAAAACTGGTACCTTAACTTTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCTACAAAATGTTGTGGAAAATTTTTCCAATGCTATGGCCCCTAAAGTTCTTGAGTTATTCCAACAAGGAGTTGGCCTCAACACAACTGGCAGTATATATAAATCTTCATCAACATCTGAACATGAAATTTCTGGTAGCCCAACAGAGAAAGCTATACTCTTGTGGGCCGTGTCAGATTTAGGCATGGACATGGATAAACTGAAGCGCACATACGAAGTTCTCCATGTTGAAACGTTTAACTCTGAAAAGAAACGAAGTGGAGTCGCAATAAGGACGAAGACCAACAACACAGTTCACGTTCATTGGAAAGGGGCTGCAGAGATTATACTTGCAATGTGTTCACATTATATTGACAATGATGGCATGGAGAAGTCCCTTGATGAAGAAAGGAGTAAACTTGAAAATATAATTGAAGGCATGGCTGCTAGCAGCCTTAGATGTATTGCTTTTGCTCACATGCAGATTTCAGAAGATATTGATTATAACGATAAGGAGAAAGCACATCAAATCCTTAGAAAAGATGGCTTGACCTTGCTAGGTATTGTTGGCCTCAAGGATCCATGCCGACCCGACGTCAAGAAGGCTGTGGAAGCGTGTAAACTTGCAGGAGTTAGTATCAAGATGATCACAGGTGATAACATATTCACTGCAAAAGCAATAGCAACAGAATTAGAGAAGATCCGCGTGATGGCAAGATCATCCCCTTTGGACAAACATTTAATGGTGCAATGCTTGAAAAAGAAAGGTCACGTTGTTGCAGTCACAGGAGATGGCACAAATGATGCACCTGCTTTGAAAGAAGCCGACATTGGACTTTCTATGGGGATCCAAGGAACTGAAGTTGCCAAGGAAAGTTCTGACATTGTTATCTTAGATGACAACTTCAGTTCTGTTGTCACTGTTTTAAGGTGGGGGCGATGTGTTTACAACAACATCCAAAAATTTATCCAGTTTCAACTAACCGTGAATGTTGCAGCTCTAGTGATCAATTTTATTGCGGCAGTTTCTTCGGGAGATGTTCCCCTAACAACTGTTCAACTATTATGGGTAAATCTCATTATGGATACTCTAGGAGCATTGGCACTGGCTACAGAAAGACCTACAAAGGAGTTATTGGAGAAAAAGCCAGTGGGTAGGACTGAACCTCTTATTACTAGTATTATGTGGAGAAACCTTTTAGCCCAAGCCTTGTATCAGATTGCTGTCCTATTGGTTTTACAATTCAATGGAAAAAACCACTTGTTTCTTGGAATTGTGGGGATTACTCTTGTTCTTCAAGTTGTGATGGTGGAACTCTTAAGGAAGTTTGCTGATACAGAGCGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGCTGTGTCATGGCCAATTGCTTGGATTACAAAGCTCGTACCCGTTTCAGATAAACCGTTCTTCAGCCACGTTGTCCCTCGTACCTTCATTTTTTGA 2733 0.4241 KKRWRFAYTAIYSRRVMLALAKEVISKRNTNTHPFSKLFQTQSSSRSSTLDIIEPLIPRNGTNHYSLVPDVDKVRIASMVKDKNLLAFAEFGGVEGVANILGAIPEKGITGSHDDVAKRIEVFGSNTYQRPPPKFFMSFVVEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVTALSNIRQERQFDKLSKISNNIKVEVVRNGRPEQISIFDVVVGDIASLKIGDQIPADGLFLSGHSLLVDESSMTGESDHVEIEPSKSPFLLSGAKVVDGYGQMLVTSVGTNTAWGEMMSSISRDTNERTPLQARLDKLTSSIGKFQGSKTDINDIFNAVVRIVATAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLQNVVENFSNAMAPKVLELFQQGVGLNTTGSIYKSSSTSEHEISGSPTEKAILLWAVSDLGMDMDKLKRTYEVLHVETFNSEKKRSGVAIRTKTNNTVHVHWKGAAEIILAMCSHYIDNDGMEKSLDEERSKLENIIEGMAASSLRCIAFAHMQISEDIDYNDKEKAHQILRKDGLTLLGIVGLKDPCRPDVKKAVEACKLAGVSIKMITGDNIFTAKAIATELEKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELLEKKPVGRTEPLITSIMWRNLLAQALYQIAVLLVLQFNGKNHLFLGIVGITLVLQVVMVELLRKFADTERLTWEQWGICIGIAAVSWPIAWITKLVPVSDKPFFSHVVPRTFIF* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1610 910 Pfam haloacid dehalogenase-like hydrolase 403 694 - -
Pvu1g1610 910 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 412 609 IPR023299 GO:0000166
Pvu1g1610 910 Gene3D - 606 653 IPR023214 -
Pvu1g1610 910 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 592 760 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu1g1610 910 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 179 432 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu1g1610 910 SUPERFAMILY Calcium ATPase, transduction domain A 210 309 IPR008250 -
Pvu1g1610 910 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 894 IPR023298 -
Pvu1g1610 910 SFLD C1.7: P-type atpase like 387 733 - -
Pvu1g1610 910 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 70 838 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pvu1g1610 910 Gene3D - 97 288 - -
Pvu1g1610 910 PANTHER CATION TRANSPORTING ATPASE 333 648 - -
Pvu1g1610 910 PANTHER CATION TRANSPORTING ATPASE 2 334 - -
Pvu1g1610 910 PANTHER CATION TRANSPORTING ATPASE 836 881 - -
Pvu1g1610 910 PANTHER CATION TRANSPORTING ATPASE 649 836 - -
Pvu1g1610 910 Pfam Cation transporter/ATPase, N-terminus 92 159 IPR004014 -
Pvu1g1610 910 Pfam Cation transporting ATPase, C-terminus 836 892 IPR006068 -
Pvu1g1610 910 Pfam Cation transporting ATPase, C-terminus 765 833 IPR006068 -
Pvu1g1610 910 PANTHER CALCIUM-TRANSPORTING ATPASE 836 881 - -
Pvu1g1610 910 PANTHER CALCIUM-TRANSPORTING ATPASE 649 836 - -
Pvu1g1610 910 PANTHER CALCIUM-TRANSPORTING ATPASE 333 648 - -
Pvu1g1610 910 PANTHER CALCIUM-TRANSPORTING ATPASE 2 334 - -
Pvu1g1610 910 SFLD p-type atpase 387 733 IPR044492 -
Pvu1g1610 910 Pfam E1-E2 ATPase 211 383 - -
Pvu1g1610 910 SUPERFAMILY HAD-like 403 785 IPR036412 -
Pvu1g1610 910 Gene3D - 833 893 - -
Pvu1g1610 910 PRINTS H+-transporting ATPase (proton pump) signature 558 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu1g1610 910 PRINTS H+-transporting ATPase (proton pump) signature 680 696 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu1g1610 910 PRINTS H+-transporting ATPase (proton pump) signature 712 737 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu1g1610 910 Gene3D - 443 605 IPR023299 GO:0000166
Pvu1g1610 910 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Pvu1g1610 910 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Pvu1g1610 910 PRINTS P-type cation-transporting ATPase superfamily signature 605 616 - -
Pvu1g1610 910 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Pvu1g1610 910 PRINTS P-type cation-transporting ATPase superfamily signature 680 699 - -
Pvu1g1610 910 PRINTS P-type cation-transporting ATPase superfamily signature 704 716 - -
Pvu1g1610 910 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
Pvu1g1610 910 Gene3D - 692 832 - -
Pvu1g1610 910 Gene3D - 289 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1610 Pvu-Chr1 41268985 41272439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1610 1 909 Primary Pumps ATPases AT3G63380 61.002 0.0 1166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1610 K01537 - gmx:100790034 1548.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1610 1 41268985 41272439 Pvu1g1610 1 41268985 41272439 ECH
Pvu1g1610 1 41268985 41272439 Pvu7g2489 7 48154568 48155203 PCT