Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1606 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGGGGATGCCAGTGTTTCTTCTGGTACAAATGTTCAGGACCTGGGAGGACTCAGTCAAGGCCTCTCTAACGTTTCTCCTCAACAGCAACCCCAAAAGATCAAGAAAAAGAGAAGCCTTCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACCAATAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGACATAACCTCCCCTGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCATCTAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAATCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACAAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAACCAATTAGCCGTTGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTCTTCCAAACCCAACAACAGAACTTCCAAAACCACCATATGACCAGTTTCAACCAATGGGATTCGTCTCAAGAAAACCCTAACCCTAGTAACATCGCCACTTCCCTCCACATCAAGCCAGAATCTCAAACTTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAACAAGAGCAGCAACACCCCAACAAGGGCATGATAATCTCACCTTTCAGGAACCTCCACGTGCCCTCACAAGCCTCCATTGCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTCGGAGCCGCTGCCATGACGGGCCCAAGCCCTGCTGCTGCTGGGCCTCAGCGCGCAATGGGTCACGTGACTCAGCTCGGCGCGGGCGAGTTCGGAACAGTGAGTCAACTCGACCCGGTGGTGGTGCCGGACTACGTGAGAGGGTTCCCCGGTCGGAGTCTCAAGAGTGACCGTCTAACTAGGGACTTCCTCGGACTCACGGGAGAAGCTAACGGCGGAGTTGACGGAGCCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGTCGTTCGCAGGGAATGTGGAGTACCTACAACCGCTCCGTCAGCATCACCACCACACGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1386 0.5115 MFPTAISNSTSLSGDASVSSGTNVQDLGGLSQGLSNVSPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAATTTTNPFQSLFLFQTQQQNFQNHHMTSFNQWDSSQENPNPSNIATSLHIKPESQTFHNPTLSSLLQQQEQQHPNKGMIISPFRNLHVPSQASIAATSAYMSATALLQKAATVGAAAMTGPSPAAAGPQRAMGHVTQLGAGEFGTVSQLDPVVVPDYVRGFPGRSLKSDRLTRDFLGLTGEANGGVDGAAVDVSTNVKDMLSFAGNVEYLQPLRQHHHHTLLKPQQGFGFLETTTAPETWGNC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1606 461 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 439 - -
Pvu1g1606 461 Gene3D Classic Zinc Finger 55 124 - -
Pvu1g1606 461 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pvu1g1606 461 MobiDBLite consensus disorder prediction 1 48 - -
Pvu1g1606 461 MobiDBLite consensus disorder prediction 1 59 - -
Pvu1g1606 461 Gene3D Classic Zinc Finger 145 210 - -
Pvu1g1606 461 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pvu1g1606 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 439 - -
Pvu1g1606 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Pvu1g1606 461 SMART c2h2final6 76 98 IPR013087 -
Pvu1g1606 461 SMART c2h2final6 117 147 IPR013087 -
Pvu1g1606 461 SMART c2h2final6 152 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1606 Pvu-Chr1 41211931 41216156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1606 15 448 IDZ Gene Family AT4G02670 50.881 1.45e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1606 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1606 K25870 - gmx:100788975 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1606 1 41211931 41216156 Pvu7g2019 7 43594990 43598796 PCT
Pvu7g1798 7 40951214 40955016 Pvu1g1606 1 41211931 41216156 PCT