Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1605 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTCGGAATCGCCACCACCATCATCACCAACGTCTCAAACAGGAGCTGATGAGTCAACAATGGTTCCTCTTCCGAGGCCAATGGAGAGGCTTCACGAAGTAGGGCCACCCCCATTTCTGACCAAGACTTATGATGCAGTGGAGAACCCCACCACTAGCCACATAGTTTCATGGAGCAGAGGCGGTGCCAGCTTTGTGGTTTGGGATCCTCACGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCACAACAATTTCTCCAGTTTTGTACGGCAACTAAACACTTACGGCTTTAGAAAAATTGATCCCGATAAGTGGGAGTTTGCAAACGAAGGATTCCTGAGAGGGCACAGGCACCTTTTGGCAAACATAAGGAGAAGAAAGCAACCTTCTCAGCCTTCTACTCAACAAGGACAAGGTCACTGTGTTGAAGTTGGCCATTTTGGACTTGATGAGGAGGTTGATCGTTTGAAGCGTGACAAGCACGTGTTAATGATGGAGCTTGTGAAGCTGAGACAGCAGCAGCTGAATACCAGATCACACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAACAGATGATGGCCTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATCTCAAAGAAGAGGAGAAGACCAATTGAGCAAGGACCAAGAGGGGTTGGAGAATCAAGCATTGGAAGGGAAGGAATAAGCAGTGTTAAAGTGGAGTCCCAAGTGTTTGGGGAATATGGATTTGGAGTCTCAGAGTTGGAAGTTCTGGCTTTGGAGATGCAAGGTTATGGTAGGGGAAAAAGGGAACAAGAAGAAGAGCCTGAGGCACTAGAATCACAAGAGAGATTGGAGAAAGAGCTCGATGAAGGTTTTTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTACATATTCCAACTTCACCAGACCAAGATGAGGAAGAAGATGTCAATGTGTTAGCCAATCGCTTTGGTTACTTAGGGTCAAGTCCTAGATGA 1101 0.4696 MNYLYPVKEEYSESPPPSSPTSQTGADESTMVPLPRPMERLHEVGPPPFLTKTYDAVENPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHRHLLANIRRRKQPSQPSTQQGQGHCVEVGHFGLDEEVDRLKRDKHVLMMELVKLRQQQLNTRSHLEEMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAISKKRRRPIEQGPRGVGESSIGREGISSVKVESQVFGEYGFGVSELEVLALEMQGYGRGKREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELHIPTSPDQDEEEDVNVLANRFGYLGSSPR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1605 366 MobiDBLite consensus disorder prediction 14 29 - -
Pvu1g1605 366 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g1605 366 Gene3D - 42 139 IPR036388 -
Pvu1g1605 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 354 IPR027725 -
Pvu1g1605 366 MobiDBLite consensus disorder prediction 1 32 - -
Pvu1g1605 366 Coils Coil 165 199 - -
Pvu1g1605 366 Coils Coil 227 247 - -
Pvu1g1605 366 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g1605 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 24 354 - -
Pvu1g1605 366 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Pvu1g1605 366 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g1605 366 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g1605 366 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g1605 366 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1605 Pvu-Chr1 41183051 41185997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1605 22 364 HSF AT3G22830 51.715 9.26e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu1g1605 HSF_DNA-bind 5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1605 K09419 - gmx:100794264 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1605 1 41183051 41185997 Pvu7g1797 7 40921790 40924438 PCT