Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1601 ATGGGTCTGTCTGTTATTATTTATTTATTTATGATAAGATTAGTGTTGCTATTTACTATCATTTCCAGGAATTTCACTCTATCATTGGTAGTGAGTGGTAAAGCGAGTTTAGTTCAAATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATTCGTCTTGCTCGCCAAACTGACAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTTGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAACGGTGTTAACTTCTCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCATGTAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCGAGATATTCGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCCAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCACTTGACATACAATCATTGATTAACAAAATAAACAAGAGTATAGTAGCTCCCATGCCAGCTATGTATACTGCTGCTTTTCGGGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGCCCGAGCCAAGTTACGTAAGGAGAACTCTTTACGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATTCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGTATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCTCTGGTTCAGAAGAGAAAATCTATGAACTATCTGTAGGTTGTGTATATAACAAATACAATGCTGACACATCAAAAGCCACAAAGTTCTCAACAGTGGAAAGAACACCAAGATTGAGGGCCGTTACAGCTTCTGCCTCCCCCAAAAGGAAAACAATGGCACCATCAAAGACAATAAAAAACAATCGTCCAAACCGAGATTCACTTCCAGTATCTAATGCACCATCTGGAAGGTTTTCCTCACCACCAAGAGCCAGGGCGACAACAAACTTGTACACCAATTTTTGTGTCCTTGGAAATTTGAACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATTCCCAATGCCTTTCTGTGAGGATCCTTTTTTTCCTATCCGTGGACCATCATTAACTTCAGCTCGCTGCTCTTCAAGCTCAACACGGAGTACTGCGGATATCTCCATCACAATGGACAAGTGTTTAATCCTGGAGGACAAAGTTACTGTCCCCAACAGTATCAGTTATGCTTGCCCTGGTCCAAAGGGAACTGAATGCCGTTCTGAGGATGTAAAAGCTTGTGTTTCAAGTCGCTCCTCTGCTGAGGTGGATCAGCGCCGGTTTGACACGTCCTCATACCAGCAGCGCGCAGAGGCATTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTACAACAACAAAAGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCCCCCAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1932 0.4234 MGLSVIIYLFMIRLVLLFTIISRNFTLSLVVSGKASLVQMEQYEILEQIGKGAFGSALLVRHRHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALDIQSLINKINKSIVAPMPAMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPSYVRRTLYVEPESVSTLSDQDKFLSFSKDRALNPSISGTEQVSQCSTQRAHGLSSGSEEKIYELSVGCVYNKYNADTSKATKFSTVERTPRLRAVTASASPKRKTMAPSKTIKNNRPNRDSLPVSNAPSGRFSSPPRARATTNLYTNFCVLGNLNSPNVSVNAPRIDKMAEFPMPFCEDPFFPIRGPSLTSARCSSSSTRSTADISITMDKCLILEDKVTVPNSISYACPGPKGTECRSEDVKACVSSRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQKFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1601 643 CDD STKc_Nek 42 297 - -
Pvu1g1601 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Pvu1g1601 643 MobiDBLite consensus disorder prediction 425 460 - -
Pvu1g1601 643 ProSiteProfiles Protein kinase domain profile. 43 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1601 643 Pfam Protein kinase domain 43 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1601 643 Gene3D Transferase(Phosphotransferase) domain 1 123 314 - -
Pvu1g1601 643 Gene3D Phosphorylase Kinase; domain 1 27 122 - -
Pvu1g1601 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 40 632 - -
Pvu1g1601 643 MobiDBLite consensus disorder prediction 419 460 - -
Pvu1g1601 643 PANTHER SERINE/THREONINE-KINASE NEK4 40 632 - -
Pvu1g1601 643 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Pvu1g1601 643 SUPERFAMILY Protein kinase-like (PK-like) 39 364 IPR011009 -
Pvu1g1601 643 SMART serkin_6 43 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1601 Pvu-Chr1 41130674 41137899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1601 49 298 MAP Kinase Kinase Kinase AT1G53570 31.373 1.10e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pvu1g1601 Pkinase 9.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1601 K08857 - gmx:100792678 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1601 1 41130674 41137899 Pvu1g1601 1 41130674 41137899 ECH
Pvu1g1601 1 41130674 41137899 Pvu7g1791 7 40860192 40866801 PCT