Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1588 ATGCCAAACATGCTGCCAACCGGAGAAAGAAGAAGAAAAAGAAACAACCTTAGCCGCTTGAACTTGAACCTATGTTTCTCAAGTTCCATGCAACCGTTCACACCACAATCTCACCCTACCGCCACCTCTTCAACCCTTCTTCAAAATCAAAATCAAAACCCTCCATCACAATCCGCCACGTCACCGTCCCCGATCAAAAACTTCAACTACGATCCTACTAACCCATTCCAGAGCCTCGGACCCGAACCCGAACCCGAACCTGCTGACCTGGCCTCCGCCTTCGTCTCCCAACGCTTCTTCTTCACCGACCCCGGCCGCTCCAACTCTATCGTCGAATCCACCATCACCGACGCCGATTGGGCCACCTCCTCATCCTCGCTTGAAAAACCCGTCGCCACTGTCGACGAGAAGGCGAAAGCTGCGCTTGACGGCAGCGTTGCGGTGGAGATGTACTCGCCGAACCCTTACGCAGATTTCCGCCGCTCCATGGAGGAGATGGTGGCGGCGCGCCCCGAGTTGATCGACGTGGCGGCCAATTGGAAAGCGTTGCACGAGCTTCTTCTCTGCTACCTCGCGCTCAACCCGAGGAGCACTCACAAGTTCATCCTCTGCGCTTTTTCTGATCTTCTTCTCAGCCTCATCTCTCTCTCTTCTCCTCCGCCGCAGGATCCCGGTGCCGGCGACGTTGCCGTCGGTGGTGATGGATGTTCGATTCAGATACAGTAA 726 0.5551 MPNMLPTGERRRKRNNLSRLNLNLCFSSSMQPFTPQSHPTATSSTLLQNQNQNPPSQSATSPSPIKNFNYDPTNPFQSLGPEPEPEPADLASAFVSQRFFFTDPGRSNSIVESTITDADWATSSSSLEKPVATVDEKAKAALDGSVAVEMYSPNPYADFRRSMEEMVAARPELIDVAANWKALHELLLCYLALNPRSTHKFILCAFSDLLLSLISLSSPPPQDPGAGDVAVGGDGCSIQIQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1588 241 MobiDBLite consensus disorder prediction 30 88 - -
Pvu1g1588 241 ProSiteProfiles OVATE domain profile. 148 212 IPR006458 -
Pvu1g1588 241 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 18 217 IPR038933 GO:0045892
Pvu1g1588 241 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 146 214 IPR006458 -
Pvu1g1588 241 Pfam Transcriptional repressor, ovate 152 213 IPR006458 -
Pvu1g1588 241 MobiDBLite consensus disorder prediction 30 76 - -
Pvu1g1588 241 PANTHER TRANSCRIPTION REPRESSOR OFP12 18 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1588 Pvu-Chr1 40892768 40893493 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pvu1g1588 Ovate 3.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1588 - - pvu:PHAVU_001G153000g 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1588 1 40892768 40893493 Pvu1g1588 1 40892768 40893493 ECH
Pvu1g1588 1 40892768 40893493 Pvu7g1779 7 40623990 40624637 PCT