Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1587 ATGAAGGAGGAAGAAAGCGTGGAAAGCGCGGAAAGCTGGAATTTATCCAATGCGAGGAAGAGGGGGAGAACAGATATAGTGAAACAGGAACCCACAACGAGTCTTGAGGAACACCCGATGGAACAAATTCCCGGAAACCGCAATAGAAACGTGGTTGAGCAAGGGCAATTGGGTAGCGATGAATTACAATCTAATGGAAATATCACGAACCATTCAGAAGATAAGCTTATGGGGCTGGAAATGATGGCCAAACTACAACGCCGCACCAGAGGTTTAAGACGCTTAAGGAAGATACATGGTGTGAATTTGGTGAATCGAACTAATATATGCCCCAGAAGAATAGTTAAAAAGGAAATAGTAGAAGGGAGTGAGCGAATGCCTCAGGGCGAGATGAATGAAGCTGAGAAGGTTGCGGGAAATGAGAACAAAGTTTTGTTTGAGGAGGAAAAGGGTGTGAATACCCTCGAAAGAGTGAAGAGAATGAATTTCTTAAAACAAAAACGGTTTGGTCCAAGAAATACCAGGACACGTAGAAAGCTGAACACAGGAAAACGAACTTTGTTTTCGTGGATGATTGCTTTGAAAACAATAAAATCACGGGAGAAGGTTTATTACATGAATCACAGGAGTAAATGTATATCACTGGGTGGAGAAGCCGTTGGAGATGGCATTCTGTGTGACTGTTGTTCTCAAGTTGTGTCCATTTCTGAGTTTGAATTTCACTCATGGAGGCTACAAATCTTTAATCCATTGACTAGAGGATGCAATCCACTGCAGAACATATGTTTGGGAAGAGGAAGAGGACTTAGTCTCTTGAAATGCATGGCAGAAGCCTGGGATAAGCAAACTGATTTTTCTTCTAAATTGGTTCATGAGGGGAAGGAAAAAAGCGACGACATTTGTAGAGTTTGTGGGGAAAAGGGTGACCTCATCTGTTGCAATACTTGCCCATCAACTTTCCATCGGAGCTGCATGGGTGTTCAAGCACTTCTAGATGGTGATTGGAACTGTATGAGTTGCTGCTGCAAATTTTGTGGGTTGTATTGTGGAAAGGTAGAGATCAAGTTTGAAGGGTTTGTCCCGTTTGAGATATCGTCGGAATGCCTTGTATGCGAGAGAAGATATCACCAATGCTGTCTTGCTGCCAGAGGAGGCAATTCTGCTCGTTCCAAAAGACTCTCCTTATGTGGAAACGGATGTAGGAAGATACACGAGGAACTTCAAAAGCTTCTTCGTGTTAAACATGACATAGAGGATGGCTTGTCTTGGTCTTTTCTTTACCCTGAGGATGTTGACCCTAATTTAAAAAGGTTAGAACCCGCTAAGGTTGAATGCAATGCCAAACTGGGTGTTGCATTATCTGTATTGAGTGAGAGCTTCATGCCATACATTGATGGAAGCGGGGCAGATATAATACAAAGTATTGTATACAGTTGTAGGTCAAACTTCCCTCGCCTCGACTGTAAGGGGTTTATTACTGTGATTCTTGAGAAAGATTATGAGATTATCAGCGTTGCATCAATCAGGATTCATGGGAACCAACTAGCAGAGATGCCATTTGTTGCAACTGTTTTTGGATATAGGAAGAAAGGAATGTTCGCACGGCTTCTAAAAGTAATTGAATCGGTACTCAGGCACCTCAACGTTGAGTTATTGATCGTACCAGCCGTGAAACAAGCAAAAGAAACTTGGGTTCGTTCCTTTAGGTTTGAGCCACTTGATTCGAGAACCGAGAGCATAATAAAGGGTGTGAATCTGTTGGTGTGTCGTGGCACAGAAATGTTACAGAAAAAGATACCAAAGCTTACATAA 1812 0.4238 MKEEESVESAESWNLSNARKRGRTDIVKQEPTTSLEEHPMEQIPGNRNRNVVEQGQLGSDELQSNGNITNHSEDKLMGLEMMAKLQRRTRGLRRLRKIHGVNLVNRTNICPRRIVKKEIVEGSERMPQGEMNEAEKVAGNENKVLFEEEKGVNTLERVKRMNFLKQKRFGPRNTRTRRKLNTGKRTLFSWMIALKTIKSREKVYYMNHRSKCISLGGEAVGDGILCDCCSQVVSISEFEFHSWRLQIFNPLTRGCNPLQNICLGRGRGLSLLKCMAEAWDKQTDFSSKLVHEGKEKSDDICRVCGEKGDLICCNTCPSTFHRSCMGVQALLDGDWNCMSCCCKFCGLYCGKVEIKFEGFVPFEISSECLVCERRYHQCCLAARGGNSARSKRLSLCGNGCRKIHEELQKLLRVKHDIEDGLSWSFLYPEDVDPNLKRLEPAKVECNAKLGVALSVLSESFMPYIDGSGADIIQSIVYSCRSNFPRLDCKGFITVILEKDYEIISVASIRIHGNQLAEMPFVATVFGYRKKGMFARLLKVIESVLRHLNVELLIVPAVKQAKETWVRSFRFEPLDSRTESIIKGVNLLVCRGTEMLQKKIPKLT* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1587 603 SUPERFAMILY FYVE/PHD zinc finger 294 349 IPR011011 -
Pvu1g1587 603 SMART PHD_3 344 401 IPR001965 -
Pvu1g1587 603 SMART PHD_3 300 341 IPR001965 -
Pvu1g1587 603 Pfam Tify domain binding domain 217 277 IPR032308 -
Pvu1g1587 603 MobiDBLite consensus disorder prediction 21 35 - -
Pvu1g1587 603 PANTHER PHD FINGER PROTEIN 12 52 601 IPR042163 GO:0003714|GO:0045892
Pvu1g1587 603 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 52 601 - -
Pvu1g1587 603 ProSitePatterns Zinc finger PHD-type signature. 301 340 IPR019786 -
Pvu1g1587 603 MobiDBLite consensus disorder prediction 1 48 - -
Pvu1g1587 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 396 IPR013083 -
Pvu1g1587 603 ProSiteProfiles Zinc finger PHD-type profile. 298 343 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1587 Pvu-Chr1 40882561 40888574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1587 182 599 PHD Transcription Factor Family AT1G05380 41.452 8.08e-104 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1587 - - pvu:PHAVU_001G152900g 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1587 1 40882561 40888574 Pvu1g1587 1 40882561 40888574 ECH
Pvu1g1587 1 40882561 40888574 Pvu7g1778 7 40607300 40615468 PCT