Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1571 ATGGAAAACCCTAACACTGTATCAAGAGGCTTGAAGCGTAAACCTGAAGGAGATCTAAGCCAGAACCAATCAGATTTCAAGGCTCAATGCCTCTCGTCAAAGTTCCGTAAGAAGATTTTACGTCAGGTTTCTCTTCTTAATTCTACTACCTCGGATCCTCTTACACTTCAGAAAGCCATTCACAACCTCTCCGTACTTGCAGAAGATGAGGATCTTGTGGATACTGTGCTTGATTGTGGTGTTGTTCCTGCTCTGGTGAGGCATTTTAAACTGCCAGATGCACGAAATGATGATAATAGTAATATAGGTAAAGACTCTAGTGACAGAGTTATCGATCATGAGGAGTGTGAGATGGCCAAAGGATGTGCTCTCATTATCGAGCTTCTCGCAGTCAAACAAGAGTATCAGGACCTCATAGTAGGTGCTGGAGCCTTGCCTTGTCTAGTAGAATCTTTAAAGAAGCACAAGATCTGTACTATTTCTCAGCCACTCATTAATCTTCTAAAGAGAGCAGCTGATGCAATAACGAGCTTAGCTCATGAAAATAGTGATATCAAGACTTGTGTTAGGAGAGAAGGTGGTATACCTCCTCTGGTTGAATTGCTTGAATTTGGTGATATTAAAGTACAGAGAGCAGCTGCACGGACCTTAAGAACTCTTGCATTTAAAAATGATGGCAATAAAAATCAGATAGTTGAATGCGATGCATTACCTACTCTTGTACTAATGCTTGGATCAGAGGATTCTAAATTACATTCTGAGGCGATTGGTGTGATTGGAAATCTGGTTCACTCTTCGCCAAATATTAAGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCTGTCATTTGTTCACTTAGTTCTAGTTCCTATTGTTCGGAGAGCAGAAGAGAAGCAGCCCTTTTACTTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTGCCCAACGAGGGGCTATTCCACCATTGGTTGATATGCTGAAGTCTTCTGATGCCGAGCTTCAGGAAATGTCGTCTTTTGCACTTGGGAGGTTGGCACAGGACTCGCATAACCAAGCTGGTATTGCTCAAAGTGGAGGTATAGAGCCATTACTTAAACTTCTCGACTCAAAGAAGACGCCTGTCCAACAAAATGTTGTTTTTGCCCTCTATGGTCTTTCTGATAATGAGGACAATGTTGTTTGTATTATTAAGGCTGATGGTTTTCAAAGACTGAAGGCTGGAAATTTCAAAAATCAACAAACTGTAGAGTGTGCCATGAAGACGTTAAAAAGATTGGAGGAAAAGACTCAAGGGCGAGTGTTGAAACAGCTAATACGTCTTATGTGCTACCCTGAAGAAGTGGTTCAAAGACGTGTAGCTATTGCTCTTGCATATTTATGTTCTCCTCGTGATAGTAAAACTATATTCATTGACAACAGAGGATTAAATTTGCTGCTGGACATGCTTAAATCTCCAAACGTAAGGCAGATGAGTGATGCTTCGGCTGCGCTTCACAAATTGGCTGCCAAAGCCCATTCTTCCGTTGTCTCCCTTTTTGAACTTCCTCCTCCGTCACCAAGTCCTCAGGTGTACTTGGGCGAGGAATATGTAAACAATCCAAAACTTTCTGACATTACATTCCTGGTTGAAGGTAGAACCTTTTATGCTCATAGAGATTGTTTAGTTTCTTCAGACATATTTCGCGCCATGTTTGATGGCAGTTATAGGGAGAGGGAAGCAAAAAATGTAGTGATTCCAAATATAAAGTGGGATGTCTTTGAATTGATGATGAGATTTATATATACTGGAACGGTAGATGTCAGTTTGGATATGGCTCAGGATCTCCTCAGAGCGGCAGATCAGTATCTTCTGGACGGTCTCAAGCGTATTTGTGAATATGCTATTATTCAGGAAATATCAGTGGAAAATGTTGTAATACTGTACAAGGTGGCTGAAGATTTCAATGCTACTTCATTAAGACATGCATGCATACTGTTTATGTTGGAGAAATTTGATGTACTGAGATCTGAACCATGGTATTGTTCCCTGGTACATCACATTCTTCCAAATATATGCATGTTCTTCTCTACTTTACTTGTTAAGTCTCATCCAGTTGACTTGTGA 2115 0.4061 MENPNTVSRGLKRKPEGDLSQNQSDFKAQCLSSKFRKKILRQVSLLNSTTSDPLTLQKAIHNLSVLAEDEDLVDTVLDCGVVPALVRHFKLPDARNDDNSNIGKDSSDRVIDHEECEMAKGCALIIELLAVKQEYQDLIVGAGALPCLVESLKKHKICTISQPLINLLKRAADAITSLAHENSDIKTCVRREGGIPPLVELLEFGDIKVQRAAARTLRTLAFKNDGNKNQIVECDALPTLVLMLGSEDSKLHSEAIGVIGNLVHSSPNIKKDVLLAGALQPVICSLSSSSYCSESRREAALLLGQFATTDSDCKVHIAQRGAIPPLVDMLKSSDAELQEMSSFALGRLAQDSHNQAGIAQSGGIEPLLKLLDSKKTPVQQNVVFALYGLSDNEDNVVCIIKADGFQRLKAGNFKNQQTVECAMKTLKRLEEKTQGRVLKQLIRLMCYPEEVVQRRVAIALAYLCSPRDSKTIFIDNRGLNLLLDMLKSPNVRQMSDASAALHKLAAKAHSSVVSLFELPPPSPSPQVYLGEEYVNNPKLSDITFLVEGRTFYAHRDCLVSSDIFRAMFDGSYREREAKNVVIPNIKWDVFELMMRFIYTGTVDVSLDMAQDLLRAADQYLLDGLKRICEYAIIQEISVENVVILYKVAEDFNATSLRHACILFMLEKFDVLRSEPWYCSLVHHILPNICMFFSTLLVKSHPVDL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1571 704 MobiDBLite consensus disorder prediction 1 25 - -
Pvu1g1571 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 466 506 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 182 222 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 69 131 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 310 350 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 132 180 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 224 264 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 266 308 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 424 465 IPR000225 GO:0005515
Pvu1g1571 704 SMART arm_5 351 391 IPR000225 GO:0005515
Pvu1g1571 704 SUPERFAMILY POZ domain 531 634 IPR011333 -
Pvu1g1571 704 Pfam Armadillo/beta-catenin-like repeat 182 221 IPR000225 GO:0005515
Pvu1g1571 704 Pfam Armadillo/beta-catenin-like repeat 310 348 IPR000225 GO:0005515
Pvu1g1571 704 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
Pvu1g1571 704 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Pvu1g1571 704 Gene3D - 295 410 IPR011989 -
Pvu1g1571 704 Gene3D - 19 159 IPR011989 -
Pvu1g1571 704 Gene3D - 411 518 IPR011989 -
Pvu1g1571 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 IPR044282 -
Pvu1g1571 704 Gene3D - 160 294 IPR011989 -
Pvu1g1571 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Pvu1g1571 704 ProSiteProfiles BTB domain profile. 540 606 IPR000210 GO:0005515
Pvu1g1571 704 SMART BTB_4 540 636 IPR000210 GO:0005515
Pvu1g1571 704 Gene3D Potassium Channel Kv1.1; Chain A 525 665 IPR011333 -
Pvu1g1571 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Pvu1g1571 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Pvu1g1571 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 5 703 - -
Pvu1g1571 704 SUPERFAMILY ARM repeat 166 512 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1571 Pvu-Chr1 40608279 40612919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1571 279 504 U-box Gene Family AT5G67340 27.234 2.57e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu1g1571 BTB 4.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1571 - - gmx:100783124 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1571 1 40608279 40612919 Pvu1g1571 1 40608279 40612919 ECH