Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1561 CATCCTCCGACAGAAAACATAGCACAAGGCGACACAGACACTCACTACTCTCAGACAGTGTCCAGCATCCTCCAAAAGAACTCTGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACTGATTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCACCGACGAGTACCACGGTCACTTTCACATGACGGTGGCAGACGTCACCTCTCAGTGGCTCCTCAAGTACATCCTCTTCAGTGTTCCTTACCTGCACGCCAACCGGCTAAAGGCCAAGGGGGCGCCGTCATACGAGACCAGCCATGTGATGGCGGAGCGCCGTCGGAGAGAGAAGTTGAATGAGAGGTTTCTGACTTTGCGTTCAATGGTACCGTTTGTAACAAGAATGGACAAGGCATCCATTCTGGGAGACACCATCGAATACATAAAACAGCTAAGGGAGAAGATTGAGAGGCTGGAGGCACGTGAGCGGCACCCGGGGAAGAGGAGGATGGGGGAGGTTGAGGTTTCGATCATAGAGAACGATGCACTGTTGGAGTTGGAGTGTGTGCATAGGGAAGGGTTGTTGCTGGATGTGATGACAATGTTGAGGGAGTTTGGGGTGGAAGTTATGATGGTGCAATCATGGGTTAGGGATGATGGAGTGTTTGTGGCAGAGATGAGGGCCAGAGTCAAGGAAAATGGTAAGGGGAAAAAGACTATTGTGGATGTAAAGAATGCCCTAAACCAAATTATACCCCGTCATATACCCCACCATGACCCATACACACTGCCTTCCAATGATCATTTTTAA 795 0.5069 HPPTENIAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGTDEYHGHFHMTVADVTSQWLLKYILFSVPYLHANRLKAKGAPSYETSHVMAERRRREKLNERFLTLRSMVPFVTRMDKASILGDTIEYIKQLREKIERLEARERHPGKRRMGEVEVSIIENDALLELECVHREGLLLDVMTMLREFGVEVMMVQSWVRDDGVFVAEMRARVKENGKGKKTIVDVKNALNQIIPRHIPHHDPYTLPSNDHF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1561 264 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Pvu1g1561 264 PANTHER TRANSCRIPTION FACTOR TT8 12 247 - -
Pvu1g1561 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983
Pvu1g1561 264 Coils Coil 136 156 - -
Pvu1g1561 264 Gene3D - 95 158 IPR036638 GO:0046983
Pvu1g1561 264 SMART finulus 103 152 IPR011598 GO:0046983
Pvu1g1561 264 PANTHER TRANSCRIPTION FACTOR TT8 12 247 - -
Pvu1g1561 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 160 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1561 Pvu-Chr1 40427071 40428154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1561 15 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.107 5.27e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g1561 HLH 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1561 - - pvu:PHAVU_001G1503000 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1561 1 40427071 40428154 Pvu7g1763 7 40396006 40397270 PCT