Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1553 ATGTATGGTGGCGCACACCACAACAGATCTTTAAATTCTTCTCCTTCCACGATCAATTCTCCACTTCTTCATCCATCAAAAACCCTAACCACATTCTCTCTCACCTCACTCTCCTACTCTTATCAATCTGTTACCCCCATGAGCTATCACATGAATAATGAGGATACACGTAGAGGTTTGAAAAGAAAGCCCCCATACATGGATCGAGGGCATGAACGGGGACCTTACAATATGAATTCTAGACCTTATGATAGGAACATGCTTCCTGATGGTTGGCTTGACTGCCCAGCACATGGACAAGAATTAGGACGCATAATCCCTTCAAAGGTTCCACTTGGTAAATCTTTCAATAATTACATTCCACGGGAAACATATACTCCTAAACAAGCGATTCATCAACAAAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACTAAAGAAGGAATTGGTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATGAATCTGTAAAACAATTCTGTGATGAGGTTCAAGATTTTTGCTCCCAAAGAACAAATGAAAAGAAATATATACTTGTACATTGCACCCATGGGCATAATCGCACAGGTTATATGATTGTTCACTTTCTTGTGCGTACGGAATCTATATCTGTTACTGAGGCGATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAACAGGACTATATTGACGCCCTGTACATGTTTTATCATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAACTTCTGATCCTGACTATGGTAGCACAACTGTCCCAGCTGTGGAAAATTATGGACACATTCCAGCACAAGAGAATATTGTCAGAAATGAAGTATTGACAAATGATGATATTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGAGCGATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGATCGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGACAATCTGCAACTCTTGAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGCTGATTACTTGTGATGGATGTTATTTGATCGACAGAAAATTTATTTTCCAAAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACAAGGATCCACACACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATGGCAATCAATAAGGTCTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAGCCTCGTAACATGGAACGAGAGGGCCTTTCAAAGAATACAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGAAGGAAGGGCTTTTGGTTACTATCTACTGTATCAAAGCTCCTACATAAGTTTATTCCACAACTATCGCATTCATCAGACGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTATGAGGTGGGAGCTGGTGATCGTCCTATGCTTTTTCTGTTTGAACGTGGAAGGAAGAAGTTAATGGAAGAGAATGTTATTTTTAAAGATGCATCAGACATTTCTTCTTATTCCGGAAAGATCATTGAATGCTACTGGGATTCCGGGGAGCGTCATTGGGTCTGTATGCGGACCAGAATAGACAAAGCAACTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGAAGTCTTATTGAATGAGATCAATGAGATAATTTGCCTACCTTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCATCAACATATGGTCTCTTCAAGGCGCAAGTGA 2040 0.4044 MYGGAHHNRSLNSSPSTINSPLLHPSKTLTTFSLTSLSYSYQSVTPMSYHMNNEDTRRGLKRKPPYMDRGHERGPYNMNSRPYDRNMLPDGWLDCPAHGQELGRIIPSKVPLGKSFNNYIPRETYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIGHVKIRCKGRDAVPDDESVKQFCDEVQDFCSQRTNEKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFALARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRTSDPDYGSTTVPAVENYGHIPAQENIVRNEVLTNDDILGDPIPPNQLRAMQEVCYQLLKLGTGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFIFQRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDKDPHTHKQERRYLIYDLMAINKVSLTELPFYERWKLLEKEVIEPRNMEREGLSKNTNPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLYEVGAGDRPMLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYWDSGERHWVCMRTRIDKATPNDINTYRKVMRSIKDNITEEVLLNEINEIICLPLYADRIQRDIKAHQHMVSSRRK* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1553 679 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Pvu1g1553 679 Gene3D DNA ligase/mRNA capping enzyme 310 547 - -
Pvu1g1553 679 Pfam mRNA capping enzyme, catalytic domain 351 549 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pvu1g1553 679 MobiDBLite consensus disorder prediction 7 23 - -
Pvu1g1553 679 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g1553 679 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 329 550 - -
Pvu1g1553 679 MobiDBLite consensus disorder prediction 54 70 - -
Pvu1g1553 679 Gene3D Protein tyrosine phosphatase superfamily 66 282 IPR029021 -
Pvu1g1553 679 PANTHER MRNA-CAPPING ENZYME 48 679 - -
Pvu1g1553 679 SUPERFAMILY Nucleic acid-binding proteins 552 664 IPR012340 -
Pvu1g1553 679 PANTHER MRNA-CAPPING ENZYME-LIKE 48 679 - -
Pvu1g1553 679 Pfam mRNA capping enzyme, C-terminal domain 584 647 IPR013846 -
Pvu1g1553 679 SMART dsp_5 116 261 IPR020422 GO:0006470|GO:0008138
Pvu1g1553 679 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Pvu1g1553 679 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Pvu1g1553 679 Pfam Dual specificity phosphatase, catalytic domain 140 259 IPR000340 GO:0008138|GO:0016311
Pvu1g1553 679 MobiDBLite consensus disorder prediction 50 81 - -
Pvu1g1553 679 Gene3D - 548 655 IPR012340 -
Pvu1g1553 679 CDD Adenylation_mRNA_capping 322 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pvu1g1553 679 CDD RNA_5'-triphosphatase 91 257 - -
Pvu1g1553 679 PIRSF mRNA_capping_HCE 76 679 IPR017074 GO:0004484|GO:0006370|GO:0140818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1553 Pvu-Chr1 40293362 40304082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1553 77 669 Protein tyrosine phosphatase (PTP) family AT3G09100 64.120 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1553 K13917 - gmx:100793183 1184.86