Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1539 ATGGCAACTCTTCTTCTCAGACAGTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTCGCCTCTCAAATCCACTCTTCCTTATCTCGTTCTCCTCTCTCTACTCCCAATGACTCCACCACCTCCTCCTCCTATTCTTTCAATTCCAATCCCTGGTGGAGATCCATGGCAACTTTCACCAGAACGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACGCTAACCGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGTAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTGCTCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTACGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGATATCCCTATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAAATGATGAGATTGGAAGACAAGCCATTCTAAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGAGGAACAGTTGCCACTGGCCGTGTTGAACAAGGGATCATTAAAGTCGGTGAAGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCTGGTGACAATGTTGGTCTTCTTCTCCGTGGTCTGAAGCGTGAAGATATTCAACGTGGTCAGGTGATTGCCAAGCCAGGTTCTGTAAAAACATACAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGCCGACACACCGCTTTCTTCTCTAACTACAGACCTCAGTTTTACTTGAGGACCGCTGATATTACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAGATGGTTATGCCCGGGGACAACGTTACAGCTGTGTTTGAATTGATTTCACCAGTTCCACTTGATGCAGGACAAAGATTTGCATTGAGAGAAGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAG 1353 0.4627 MATLLLRQSSSTSRRLFPFASQIHSSLSRSPLSTPNDSTTSSSYSFNSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNDEIGRQAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGEEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISPVPLDAGQRFALREGGRTVGAGVVSKVLS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1539 450 Pfam Elongation factor Tu C-terminal domain 354 448 IPR004160 -
Pvu1g1539 450 Gene3D Translation factors 394 449 - -
Pvu1g1539 450 PANTHER ELONGATION FACTOR TU-RELATED 14 449 - -
Pvu1g1539 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 280 IPR027417 -
Pvu1g1539 450 Gene3D Translation factors 260 390 - -
Pvu1g1539 450 Hamap Elongation factor Tu [tuf]. 53 450 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pvu1g1539 450 CDD EF_Tu 63 257 IPR041709 -
Pvu1g1539 450 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Pvu1g1539 450 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Pvu1g1539 450 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Pvu1g1539 450 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Pvu1g1539 450 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
Pvu1g1539 450 TIGRFAM EF-Tu: translation elongation factor Tu 54 449 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pvu1g1539 450 Gene3D - 54 257 IPR027417 -
Pvu1g1539 450 CDD EFTU_II 265 353 IPR033720 -
Pvu1g1539 450 SUPERFAMILY Translation proteins 259 355 IPR009000 -
Pvu1g1539 450 TIGRFAM small_GTP: small GTP-binding protein domain 65 201 IPR005225 GO:0005525
Pvu1g1539 450 CDD EFTU_III 356 445 - -
Pvu1g1539 450 Pfam Elongation factor Tu GTP binding domain 62 255 IPR000795 GO:0003924|GO:0005525
Pvu1g1539 450 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Pvu1g1539 450 Pfam Elongation factor Tu domain 2 279 349 IPR004161 GO:0005525
Pvu1g1539 450 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 359 449 IPR009001 -
Pvu1g1539 450 PANTHER ELONGATION FACTOR TU 14 449 - -
Pvu1g1539 450 MobiDBLite consensus disorder prediction 26 45 - -
Pvu1g1539 450 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 258 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1539 Pvu-Chr1 40161074 40165268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1539 60 448 Eukaryotic Initiation Factors Gene Family AT5G60390 30.275 1.62e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1539 K02358 - gmx:100791600 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1539 1 40161074 40165268 Pvu1g1539 1 40161074 40165268 ECH