Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1527 ATGCCACTGTTCCCGATTCTTGTCACCATCTTCCTCACTCTCCCTGCCCTTTCCCTCTCCGTTCCCTGTCCTCTCAACATCACCCTCTTCCGTTACAGACCCTCCTCCGACCCCAAGACACGCTGCCGTTACATCATCCAATCCCTGCGTATTCTTCAATCCGATTTTCTCCGCCGCACCGGTTTCTTCCATCCTTCCGACGCCTCCTTCTCTTGCTGGAACACTCTCCAATCTCACACCCAACAATACGACATTCGCTCCTCCTGTAACCTCTCTTCCTCTTCCATTTCCCTCTCCTGCAACAACATCTCCACCCGATCCCAATTCCAGGACTCTCTTCCTCTCTCAGCTCTTAAACCCGTCTGGAATACTTGTAACCAATCTCTCAACAGTGCCGCATCTTGTGCTCTCTGCACCGACGCTTTGTCCAACTTGGATTCCCACATCACCGACAATACCACTGATTGCAAGAGTATTGCTTCTATCTATGCTGCTTCCTTCTCCGACCTGCAAGACCCTGGAACTGCTGAGTGTTTGTTCCGCCTTGATTTGTCTACTTCGGTTTCCTCTGGTAAGCCTCGAACCATTCTTATTGTGGTTTTTTGTGTGCTGGCCTTCTTATTGAAGAAAAAAAGGAATATTTGTAAAACTGAGATGGATTTGGGTTCTGGGTTGGATTCTATGAACCATAGTACTACTTTGATCAGGTTCACCTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCTGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTATAGAGGGATGTTGTTTGATGGTACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTTACTCATGAAGTTGAGGTTATTGCGAGCGTGAGGCATGTGAACCTTGTTACCTTGAGAGGGTATTGTACTGCTACAACTAATTTAGAGGGTCACCAGAGGATTATCGTAACTGATTTGATGGAGAATGGGAGCGTTTATGATCATTTATTTGGTTCTGCTAAGCAGAAACTGAGTTGGCCAATTCGTCAAAAGATTGCTCTAGGCACTGCTAGGGGCTTGGCTTATTTGCACTATGGGGCTCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTGGACCGTAAGTTTGAAGCCAAGGTAGCGGATTTTGGATTAGCGAAGTTCAACCCTGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGAACCGTGGGGTATGTGGCACCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGAAGTGACGTGTTCAGTTTTGGGGTTGTTCTTCTTGAGCTTTTGAGTGGGAGAAGGGCTCTTCAAATTGACACTGATGGGCAACCCTCTGCAATCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTGAAGCTTTGGACGTTATTGAAGATGGTATGCCAGAACTTGGTCCAACAGAAATTGTTGAGAAGTATGTATTGGTTGCTGTACTATGTTGTCATCCACAACTACATGGTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGATGGAGGAATCAGTGTCCTCATTAATTCAAGATCCAATGTCTTGTATTGCTGGGAGGATTGATACTGAGAAATCTGTGTAG 1653 0.4543 MPLFPILVTIFLTLPALSLSVPCPLNITLFRYRPSSDPKTRCRYIIQSLRILQSDFLRRTGFFHPSDASFSCWNTLQSHTQQYDIRSSCNLSSSSISLSCNNISTRSQFQDSLPLSALKPVWNTCNQSLNSAASCALCTDALSNLDSHITDNTTDCKSIASIYAASFSDLQDPGTAECLFRLDLSTSVSSGKPRTILIVVFCVLAFLLKKKRNICKTEMDLGSGLDSMNHSTTLIRFTFDEIKKATRNFACDNIIGKGAYGNVYRGMLFDGTQVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSVYDHLFGSAKQKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDRKFEAKVADFGLAKFNPEGMTHMSTRVAGTVGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRRALQIDTDGQPSAITDFAWSLVRNGEALDVIEDGMPELGPTEIVEKYVLVAVLCCHPQLHGRPTMDQVVKMLEMEESVSSLIQDPMSCIAGRIDTEKSV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1527 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Pvu1g1527 550 CDD STKc_IRAK 255 524 - -
Pvu1g1527 550 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 19 550 - -
Pvu1g1527 550 ProSiteProfiles Protein kinase domain profile. 249 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1527 550 SUPERFAMILY Protein kinase-like (PK-like) 225 525 IPR011009 -
Pvu1g1527 550 Gene3D Transferase(Phosphotransferase) domain 1 330 538 - -
Pvu1g1527 550 Pfam SPARK 21 153 IPR043891 -
Pvu1g1527 550 Gene3D Phosphorylase Kinase; domain 1 213 328 - -
Pvu1g1527 550 PANTHER OS01G0253100 PROTEIN 19 550 IPR045271 GO:0004714|GO:0006468
Pvu1g1527 550 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Pvu1g1527 550 SMART serkin_6 249 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1527 550 Pfam Protein tyrosine and serine/threonine kinase 252 523 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1527 Pvu-Chr1 40014299 40015980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1527 23 548 Receptor kinase-like Gene Family AT2G48010 58.393 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Pvu1g1527 PK_Tyr_Ser-Thr 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1527 - - vun:114194863 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1527 1 40014299 40015980 Pvu7g1728 7 40055056 40058050 PCT