Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1498 ATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACAAAATCTAGTGTTGGGTTGAATGGAAAGAACGGAGTTAGTTCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAACTTAATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTGCCATTGTAAAGTTGAAGTCCACAATATCTGCCCATCTTGCCATCATGAACTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCGTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGACATATTCCCTTACTATACTAAGCTCAAGCACGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCGACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGATATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCTCATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTTCAGCTTGGCTCAGCTCCAGTGTATATGGCTTTTTTGCGATTTATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTTATGTGGCAAGGGATTCCGAGGAGCATTCGGGACAGCCATAGAAAAGTTCGGGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTGAAGTTGAGAATCAGTGGTCGTATATGGAGAGAAGATTGA 930 0.4161 MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSVGLNGKNGVSSNNGVYELLGCSVCKNLMYPPIHQCPNGHTLCCHCKVEVHNICPSCHHELGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLMWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRISGRIWRED* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1498 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 168 IPR013083 -
Pvu1g1498 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Pvu1g1498 309 SUPERFAMILY TRAF domain-like 114 305 - -
Pvu1g1498 309 CDD RING-HC_SIAHs 61 96 - -
Pvu1g1498 309 MobiDBLite consensus disorder prediction 28 45 - -
Pvu1g1498 309 MobiDBLite consensus disorder prediction 22 45 - -
Pvu1g1498 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pvu1g1498 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 308 - -
Pvu1g1498 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 308 - -
Pvu1g1498 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1498 Pvu-Chr1 39410626 39414938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1498 1 309 C3H Transcription Factor Family AT2G41980 78.641 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1498 K04506 - gmx:100813966 626.706