Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1492 ATGAATTATGTTGATTATAAAAAACAATGTTTTGAGGCCCGTCCTTGTTTTATAGCATCATCTAAGGGAAAGAAAAAGAAAAATGAAACCGTTGTAAGTCATAGTGTTGATTCTTGCACCATTCTGGTGTGTGCCTTTTCACACTCTCAGTTTCATTTAAAAACCTTGATCAGTATTCATTCTTCATACTTTCTCAAACCACACAATCTTTTTCCATTACCAGATATGGAGTTGGCTTTGAGCTTAGGCCACACAGACAATGCTTCACTAGGTTTCTCCATACCAACACCTTCCTCAGATCCACCCCTTCACCTCCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATTAGGCATGGAAGAGATACCGGTGAGAACGCTTGATGACACGGACGACGCTGCTGCAGTCTCATCCCCCAACAGTGCAGTATCGTCATTTCAGATGGATTTTTGCAGAAACAATAGAAAGTTTTCTGAGGGTGACAGCGAAGAAGACGAAAATGGGACAGCAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTCCTGGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGTTCTTGCAAAAGAGTTAAATCTCCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGAGTCTGACAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAGGAACTGAGGGCTTTGAAAACTTGTGAACCTTTTTTCAAGCAGCTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCACCTCCGCTGCCGCCACCAACAAAGGTGGTGTTTCTCGGGACAAGCCCAGAATATTGTCAAGCCCACCCGCAGCAGGCCCACATGGCTCATCAGATTGCTTCTTCATCTGA 1014 0.4566 MNYVDYKKQCFEARPCFIASSKGKKKKNETVVSHSVDSCTILVCAFSHSQFHLKTLISIHSSYFLKPHNLFPLPDMELALSLGHTDNASLGFSIPTPSSDPPLHLHHLLPSTPVLPSPRLPIPWLSHALGMEEIPVRTLDDTDDAAAVSSPNSAVSSFQMDFCRNNRKFSEGDSEEDENGTARKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENKRLQKELQELRALKTCEPFFKQLPATTLTMCPSCERVATTTSTSAAATNKGGVSRDKPRILSSPPAAGPHGSSDCFFI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1492 337 PANTHER - 102 311 - -
Pvu1g1492 337 Pfam Homeodomain 183 237 IPR001356 GO:0003677
Pvu1g1492 337 Pfam Homeobox associated leucine zipper 239 273 IPR003106 GO:0006355|GO:0043565
Pvu1g1492 337 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 102 311 - -
Pvu1g1492 337 Coils Coil 245 272 - -
Pvu1g1492 337 Gene3D - 187 237 - -
Pvu1g1492 337 ProSitePatterns 'Homeobox' domain signature. 214 237 IPR017970 GO:0000981|GO:0006355
Pvu1g1492 337 SUPERFAMILY Homeodomain-like 176 240 IPR009057 -
Pvu1g1492 337 CDD bZIP 230 271 - -
Pvu1g1492 337 SMART halz 239 282 IPR003106 GO:0006355|GO:0043565
Pvu1g1492 337 CDD homeodomain 183 240 IPR001356 GO:0003677
Pvu1g1492 337 MobiDBLite consensus disorder prediction 304 337 - -
Pvu1g1492 337 ProSiteProfiles 'Homeobox' domain profile. 179 239 IPR001356 GO:0003677
Pvu1g1492 337 SMART HOX_1 181 243 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1492 Pvu-Chr1 39332600 39334158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1492 75 303 Homeobox Transcription Factor Family AT5G47370 48.837 1.98e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu1g1492 Homeodomain 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1492 K09338 - gmx:100784703 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1492 1 39332600 39334158 Pvu1g1492 1 39332600 39334158 ECH
Pvu1g1492 1 39332600 39334158 Pvu7g2687 7 49902764 49905002 PCT