Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1489 ATGGCCATGGGAATGGAACGAGTGCAGTGTAGCTATGGCTCTCTGGACGAAACGTTCAAAATTAGGAAAGAGATGTTTCACGGCCAACAGTACAGCCATATTTACTTCGCACGCCTTCATTTGATGCGAACTCTGTTGTATTCTCTCGTTCCTCATTGGAAACCTAATTTTCCCGTGTGCACGGTGCTGGAATTGGAGGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTCAAACCTTGTATACTTGACGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGGACTCGGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAACTCAGTGGAAATATCATTCCGCCCTCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTGGATGCTGGCTTACCCCCACAGATAGAATTTCCTCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGGGTTGGGAGCAGCACCTCTAATCCTCTTCAATTTCAGCTTCTCGTTGATCATATCACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCGTCAAAAATTGTTCAAGTTGTCTTTGCTGGAAATCTAGTTGAGATACCTCAGAGACTTCTTAACGGACAGAATTTGGCTTCAAAGGATCTTGCAATAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACACAGTGACCCTGCTAATTTCTCATTGCCACAACAGTCATTGCATGGATGCCTTTTCCCTGGGTCTTCTGCATACAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTATTGGGACATCGGGTCAAAATGTAGATGATCTTGAGAAATATTCGGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGGTGGAGGCATTTAGCACCCACTGCACCTAATACTCTTGGGTGCTTTCCTTATACTGAGAGGGATCCTTTCTTCATTGAGAGCTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGGATCGTAAAGGGATCAGAAGGGCAGTTAGTGAGACTAATATGTGTTCCTAAATTCAGTGAAACTGGAATTGCTGTTATGCTTAATCTAAGGGACCTCGAATGTCATGCTCTCAGTTTTGGAACCCAATTCGGCTCATAA 1308 0.4235 MAMGMERVQCSYGSLDETFKIRKEMFHGQQYSHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEGKECVIVGTLYKHMKLKPCILDEYSKQKSVVPLVKPHNFMDSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLRVGSSTSNPLQFQLLVDHITGHLGDEKEQSIASKIVQVVFAGNLVEIPQRLLNGQNLASKDLAIMSEPIRELDILLSQIAAGLPLDIMPGHSDPANFSLPQQSLHGCLFPGSSAYNTFRSCTNPHCFELDNVRFIGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPYTERDPFFIESCPHVYFVGNQDKFETRIVKGSEGQLVRLICVPKFSETGIAVMLNLRDLECHALSFGTQFGS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1489 435 Gene3D - 169 434 - -
Pvu1g1489 435 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 429 IPR024826 -
Pvu1g1489 435 CDD MPP_PolD2_C 177 429 IPR041863 -
Pvu1g1489 435 Pfam DNA polymerase alpha/epsilon subunit B 178 388 IPR007185 GO:0003677|GO:0006260
Pvu1g1489 435 Pfam DNA polymerase delta subunit OB-fold domain 30 157 IPR040663 -
Pvu1g1489 435 Gene3D - 37 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1489 Pvu-Chr1 39277547 39283384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1489 6 434 Core DNA Replication Machinery Family AT2G42120 73.427 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1489 K02328 - gmx:100780072 800.045