Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1476 ATGGATACTCGCAAGAGGGGAAGACTCGAACTCGGTTTCAACTCCAATGGTGGATTTAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCTTTTGGCGAGGGCTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATTTAACGCCTGCTGCACCTCCAGCGCCAAGAAATGTTGCAGCTCTGCCACCTGTTCCAAATGGGTCCGCACCATCTGCTGTTAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCATATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCACTGCATCAGGTCGTTTTGCTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATCAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCCATCCGGGAGCATGAATCTGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCCTCATCAAAAGCTAACCAAGGGGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTTCCAAAGGATCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTGCTGAATTGCGTAAATCAGTATGA 888 0.4606 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPAPRNVAALPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTASGRFAGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASSKANQGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGAAELRKSV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1476 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Pvu1g1476 295 Gene3D K Homology domain, type 1 164 260 IPR036612 GO:0003723
Pvu1g1476 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Pvu1g1476 295 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Pvu1g1476 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pvu1g1476 295 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Pvu1g1476 295 SMART kh_6 167 237 IPR004087 GO:0003676
Pvu1g1476 295 Gene3D - 261 294 - -
Pvu1g1476 295 Gene3D - 94 131 - -
Pvu1g1476 295 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Pvu1g1476 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 239 IPR036612 GO:0003723
Pvu1g1476 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Pvu1g1476 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Pvu1g1476 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Pvu1g1476 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pvu1g1476 295 MobiDBLite consensus disorder prediction 1 26 - -
Pvu1g1476 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pvu1g1476 295 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Pvu1g1476 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Pvu1g1476 295 CDD KH-I 170 233 - -
Pvu1g1476 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Pvu1g1476 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Pvu1g1476 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1476 Pvu-Chr1 39106940 39110116 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu1g1476 KH_1 1.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1476 - - gmx:100803981 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1476 1 39106940 39110116 Pvu7g2670 7 49744488 49748916 PCT