Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1473 ATGAACGAGAACAAGGTTCATTGGGGAGGATTGATTCAACAAACTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGCAACCATTACTGTCAATATTTTGATATCAGACAGGCCTGGAATATGGGTCCACTTGCGATGGTTGGAGGAGAAGCTACAGATCAGTTGCCAAACATAGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTACAGAAAACTGCATGGGATTTGCAGAATACGATTGCCAAGTTGGTATTCAACCTCAGTTATCTAAGATTAATGATTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCAGCAAATCAACCTGACTCCAGCTACGACTTGTCAAACACTTTGCAGTCCATAGTGAAATCTCAATTGAATAATAATCAATGTCGTGTATCCCCTGAAAGTTCCAGTAAAATTTCATGTGGGAATTTTCCCACCACCAAGTTCCTTCCAATTGAACAACAGAAGTTGTTCATTGATGGTGTTATCAGGGGCTCCTCATTTCCTAACAAAGGAAGTCAGGACCATATGGTTGCTTGTGGATCTTTTAATTTACCTGTTGCACATCTGAGATTTTCTTCTGAGATTGAGAAGTTGTCTCCCACACTTTCAGCAGCAAGTGTGTCTACTGTTGGAAACTCTGCTTCTAATGGGGCAGTAGTCTCAAGTAAAACACGTATAAGATGGGCTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCACGCAACGCCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATATTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCGAAATTCATTCCAGAGCCCAGTCAAGGGAAATCTGACAAAAGAACCCACACAAAGAATTTGCATCATCTTGATGTAAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCTCAAAGGTGTCTTCACGAACAACTAGAGGTTCAGAGAAAATTACAGTTGAGAATTGAGGAACAAGGAAGGCAACTAAAAAAAATGTTTGACCAGCAGCAAAAGACAAGTAATAACCTCTTATATGCTCACGATTCAGCCACTGATGAAACAACAATTACTCATAAAGATGGTGAGGTTTCTGTTTCTGAAGGGGCCAACAATTCCTTCTTCACTTCCAAGGCCTCGCCGAGCCAATAA 1260 0.4056 MNENKVHWGGLIQQTHGLSGDFNSEFGNHYCQYFDIRQAWNMGPLAMVGGEATDQLPNIGHVKSSGTIISRFESPASAFYATENCMGFAEYDCQVGIQPQLSKINDLEFPLYQSPRENLFLDSANQPDSSYDLSNTLQSIVKSQLNNNQCRVSPESSSKISCGNFPTTKFLPIEQQKLFIDGVIRGSSFPNKGSQDHMVACGSFNLPVAHLRFSSEIEKLSPTLSAASVSTVGNSASNGAVVSSKTRIRWAKDLHEKFVECVNRLGGSEHATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPSQGKSDKRTHTKNLHHLDVKTGLQIREALKLQLDAQRCLHEQLEVQRKLQLRIEEQGRQLKKMFDQQQKTSNNLLYAHDSATDETTITHKDGEVSVSEGANNSFFTSKASPSQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1473 419 MobiDBLite consensus disorder prediction 401 419 - -
Pvu1g1473 419 MobiDBLite consensus disorder prediction 398 419 - -
Pvu1g1473 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 41 419 IPR044848 GO:0003700
Pvu1g1473 419 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 41 419 - -
Pvu1g1473 419 SUPERFAMILY Homeodomain-like 243 299 IPR009057 -
Pvu1g1473 419 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
Pvu1g1473 419 Gene3D - 244 303 - -
Pvu1g1473 419 Coils Coil 332 352 - -
Pvu1g1473 419 Pfam MYB-CC type transfactor, LHEQLE motif 329 376 IPR025756 -
Pvu1g1473 419 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1473 Pvu-Chr1 39071056 39074031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1473 229 373 G2-like Transcription Factor Family AT4G28610 56.463 1.29e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu1g1473 Myb_DNA-binding 6.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1473 - - gmx:100527257 671.003