Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1470 ATGGAAGATTTGAAGAAGAGAAAACTAGACGAAGCAGGAAACGGTGATTTTACTTCCAAGGAAGAACTTCGCTTCCTCATTGAACCTCTAGCTAAACCCCAGCTCGTTGATCTTCTAGCTAAACTAGGGTCCCAATATCCTTCAATAGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCCGTGATCCATGATAAAGTAACAGGGAAGTCCCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAAAGCTTCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGTAGTGCCCCTGATCTTTCCCTGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATGCTGCTTCACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATATGACAGGGATACCGATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCTGAAGCTGCCAAGAAGGCCATAGATGATCTTGAAAAGGTTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCTAACAAAGGTAAAACTGGGCAGCCGCCATTTCCCTCTGGAGTGGTTCCAATGGCTTCCTTACCTATGAGCACAGGCTATATGCAGCCTGGTAAAAGCTCTGGCCCCCCAATAAATTACAATTACCCCCAAACCGTAGCACCATATTCTGCATCTTCTTATCCAAACCCTCACACAGTACCTTCTCCTTATCCAACACAAGGGCAGATTCCTTACCCTCCAGTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACCCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1002 0.4371 MEDLKKRKLDEAGNGDFTSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFEEHGEIEEGAVIHDKVTGKSRGYGFITFKNMESTQQALKASSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYIGSLSPEVTSEMLLHYFARHGEIEEGSVAYDRDTDESRGFGFVTYKTAEAAKKAIDDLEKVLGGRNIIVKYADSNKGKTGQPPFPSGVVPMASLPMSTGYMQPGKSSGPPINYNYPQTVAPYSASSYPNPHTVPSPYPTQGQIPYPPVSAKKDQHGFPPTQPVGMNNYPYYYPKQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1470 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Pvu1g1470 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Pvu1g1470 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Pvu1g1470 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 333 - -
Pvu1g1470 333 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 15 333 - -
Pvu1g1470 333 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
Pvu1g1470 333 Gene3D - 55 142 IPR012677 -
Pvu1g1470 333 CDD RRM_RBM24_RBM38_like 64 139 - -
Pvu1g1470 333 SUPERFAMILY RNA-binding domain, RBD 149 247 IPR035979 GO:0003676
Pvu1g1470 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Pvu1g1470 333 SMART rrm1_1 65 137 IPR000504 GO:0003723
Pvu1g1470 333 SMART rrm1_1 156 228 IPR000504 GO:0003723
Pvu1g1470 333 MobiDBLite consensus disorder prediction 284 321 - -
Pvu1g1470 333 Gene3D - 143 240 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1470 Pvu-Chr1 38986712 38990549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1470 147 239 C2H2 Transcription Factor Family AT2G19380 34.409 6.00e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1470 K12741 - gmx:100776344 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1470 1 38986712 38990549 Pvu1g1470 1 38986712 38990549 ECH