Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1469 ATGTTACCCTTTCGAAAACTCAACACTCAATGCTTCTTCTTCCTTCTTAAACCCTGCCAAAACCCTAGATTCCAGAGCACGAAACCCGCCACCAAAATCGTCGGAAAAACCACCGTAAAAGAAGCCCAGGCCGCATTGCTCGAGTACCTCCACTCCACCCGCAGCCTCAACTTCTTAGACGCTGACAACATGTGCAGAAACTCGCCCTCCTTCCTCCAGGACCTCCTCGCCAAAACCCACTCGCACACGCCGCACGTGGACACCAAACGCTCCATTTCGCGCTACCTCCGCTACCACCCGATCAACGAGTTCGAGCCCTTCTTCGAGAGCGCGGGTCTCTCCCCTTCCGAGTACACGCCCCTTCTCCCGCCTCACATGATTTACCTAAACGACGACGTTCTGCTAATGGAGAATCACCACGCGCTCTGCAACTACGGGATTCCCCGAACCAAGATGGGGAGGGTTTTCAAACTCGCGCCTCAGGTTTTTGGGTATGAACCCGGGGTTTTGATCTCGAAGCTTCGAGAATACGAAAACCTCGGTGTTTCGCGGAAGACTTTGATAAATGTGGTTGCTTCCAGCCCCTGCGTTTTGGTTGGAGGTGTGGATTTTAATTTTGTCAAGGTTGTGGAGATGTTGAAGGGTGTTATTGGAAAGGATTGTGATTGGATTGGAGAGCATTTGTTGATTAACAAGGATTGTTGTAATTGGAAGGTGATGTTTCAGGTTTTGAGTTTGCTTTCTAGGGTTTTCAATGAGAAACAATGGGGTGATTTACTCTCTCGTCACCCTGGTTTGATTTTTGAGGAGTCTGGAGGTTGTGTGTTATCCTTGATTGACTTTTTGTTGAAATTTGGATTGTCTGTAAACCGGGTTTGTGTCATGCTGCACGAGTTTCCGGAGATTCGGGTAGTAACATTTTTGTCCAATTTGAGGCTGTGTTTTCTGTTCTTGACTGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGGTTTTGCAGTCTCACTGGTTGGTGTTGGGTTCCTTCACCATGAAGAGAACGATAACTTTGCTTACTAACTTGAATGTTGGCAAGAAGCGACTGTGTAGAGTTGTGAGGGATGATCCTCTAGTAATGAAGAGTTGGTCATTGGGAAGGAGAATTGAGCCTCTGGTTAACTCGTATGTGGAGTTTGAATCGAAGGCTCTGAAGAAGGAGTTCATGCTAAGGTTGGGGTTTGAAGAGAACTCCAAAGCAATGGATGAGACGATTAAGTTGTTCAGGGGTAAGGGAGCTGAGCTTCAGGAGAGACTTGAATTTATTGTTAATGCTGGGTTGGATTATGAGGTTGCCTGTAAGATAATTCGAGATTCCCCGCGGATTCTTAGTCAGACCACGGATAGGATCAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATTCGATATCGGATTTGGAAACTTTTCCTTCCTTCCTTTCCTATTCAGCTCAAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAAGAGCATGGAGCTGCAGAAAAAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGAAAAAGCGTTTGAGAAGCTGTACGTGAAGCGCCATCCGTCTGGCCTTCAAGTTTGGCAGGATTTAAAGGCACAAATTTCTTCGAAGGTTTAG 1659 0.4629 MLPFRKLNTQCFFFLLKPCQNPRFQSTKPATKIVGKTTVKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFLQDLLAKTHSHTPHVDTKRSISRYLRYHPINEFEPFFESAGLSPSEYTPLLPPHMIYLNDDVLLMENHHALCNYGIPRTKMGRVFKLAPQVFGYEPGVLISKLREYENLGVSRKTLINVVASSPCVLVGGVDFNFVKVVEMLKGVIGKDCDWIGEHLLINKDCCNWKVMFQVLSLLSRVFNEKQWGDLLSRHPGLIFEESGGCVLSLIDFLLKFGLSVNRVCVMLHEFPEIRVVTFLSNLRLCFLFLTEIEMEASEIGRVLQSHWLVLGSFTMKRTITLLTNLNVGKKRLCRVVRDDPLVMKSWSLGRRIEPLVNSYVEFESKALKKEFMLRLGFEENSKAMDETIKLFRGKGAELQERLEFIVNAGLDYEVACKIIRDSPRILSQTTDRINMKIESLVNEGYSISDLETFPSFLSYSAQRVKLRFSMYNWLKEHGAAEKGLALSTIIACSEKAFEKLYVKRHPSGLQVWQDLKAQISSKV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1469 552 PANTHER CGI-12 PROTEIN-RELATED 28 545 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 Pfam mTERF 418 527 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 Pfam mTERF 250 388 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 545 - -
Pvu1g1469 552 Gene3D Transcription termination factor 3, mitochondrial 276 544 IPR038538 -
Pvu1g1469 552 Gene3D Transcription termination factor 3, mitochondrial 67 236 IPR038538 -
Pvu1g1469 552 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 SMART mt_12 476 509 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 SMART mt_12 188 220 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Pvu1g1469 552 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1469 Pvu-Chr1 38961925 38964698 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu1g1469 mTERF 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1469 - - gmx:100807690 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1469 1 38961925 38964698 Pvu1g1469 1 38961925 38964698 ECH