Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1467 ATGGGTTCAGACGCTGCTGCCACCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACTCCAGCCTCTTCTCTTACTTCTGCTGCTGCTGGAGTTACTTCTTCCTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAAGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGCAAAAGAAGTTGCCGCAGGCGACTAGCGGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGCTATGCTAGACTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCGTATCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTTCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCCACACTTAGCTGGCACGGCAATTCAGAGACACCATCTGACATTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTTGCCGGTCATCCTCCAGGGGAAAGTTACCCAGGCGTCTCTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAGCATGGGGTTCTAGAAACACAGTACCAAGTCTTGGGTTGAATAACATGATAAATTTCAATGGGACACCCATGACACAACTTACTGCTTCATCCCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTGACTGTTCGCCTGAGGTGGTCCCTAATCTAGGTCTGGGTCATATTTCACAGCCACTGAATGGCCAGCTTCATGGTGAGCTGGATCTGTCTCAACAGAGCAGGAGGCATTACATGGATCTAGAACAGTCCAGGACATATGAATCTGCTCATTGGTCACTTTAA 1074 0.4777 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPASSLTSAAAGVTSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELASYPKLSLRNSLPTSRSSELAPGSQTSTLSWHGNSETPSDIFLQGSVGGTSFAGHPPGESYPGVSDSSCALSLLSSQAWGSRNTVPSLGLNNMINFNGTPMTQLTASSHGASLHELPNTSWCFKGIDSGDCSPEVVPNLGLGHISQPLNGQLHGELDLSQQSRRHYMDLEQSRTYESAHWSL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1467 357 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 3 357 - -
Pvu1g1467 357 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 357 IPR044817 GO:0003677
Pvu1g1467 357 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Pvu1g1467 357 MobiDBLite consensus disorder prediction 186 221 - -
Pvu1g1467 357 MobiDBLite consensus disorder prediction 41 60 - -
Pvu1g1467 357 Pfam SBP domain 70 143 IPR004333 GO:0003677
Pvu1g1467 357 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Pvu1g1467 357 MobiDBLite consensus disorder prediction 41 68 - -
Pvu1g1467 357 MobiDBLite consensus disorder prediction 186 235 - -
Pvu1g1467 357 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1467 Pvu-Chr1 38925229 38929516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1467 19 357 SBP-box Gene Family AT2G42200 45.013 2.41e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu1g1467 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1467 - - gmx:100780949 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1467 1 38925229 38929516 Pvu1g1467 1 38925229 38929516 ECH
Pvu1g1467 1 38925229 38929516 Pvu7g2660 7 49641299 49646164 PCT