Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1458 ATGGCTTCCAAGACCACCAACCCAGCAACAAATAATCAATTCGAACCACTCCCACCACCTCAGCACCGTCACCCTCATCCTCATCATTATCAGTTTCAACAACACCAACATCATCAAATTCATGACCATCAAATTTCTTTTAGAATGATGCAATCCTCTTCATCATCTTCCTCTATCCCCGGAAACTACCTAGGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCCACTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCATCTAAGCCTATGCACGTAGAGCCATCATCGTCCAAGTCCAAGGCTAACATAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGGTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACAGGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGATCTACAACGTGCTAGAACTCAGGGCATGTTCTTAGGTGGAGGTGCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTCGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCATCTTCCTGAGAACGAGCTTAGACTTTTTGTGGACAATTGCTTGGCGCATTATGATCAAGTAATGAACCTCAAGAGCCTAGTGGCAAAAACAGATGTGTTTCATCTGGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGTTTTATGTGGATCGGAGGATTCAGGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAGCAACAAATATTGGGTATATGTGGATTGCAACAATCGACTCATGAGGCAGAAGAGGCTCTCTCTCAAGGGCTGGAGGCTCTGAATCAATCTCTTTCGGACACAATAGCTTCAGACTCTCTTAGCTATCCTCCCAATATGGCTAACTACATGGGACAAATGGCTGTTGCCATGAACAAGCTCTCAACTCTCGAAGGCTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCAGCTCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTAGAATAG 1449 0.4727 MASKTTNPATNNQFEPLPPPQHRHPHPHHYQFQQHQHHQIHDHQISFRMMQSSSSSSSIPGNYLGKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEGASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQDLQRARTQGMFLGGGALLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTHEAEEALSQGLEALNQSLSDTIASDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1458 482 SMART brlzneu 187 260 IPR004827 GO:0003700|GO:0006355
Pvu1g1458 482 SUPERFAMILY Leucine zipper domain 191 233 IPR046347 GO:0003700|GO:0006355
Pvu1g1458 482 MobiDBLite consensus disorder prediction 90 108 - -
Pvu1g1458 482 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Pvu1g1458 482 Coils Coil 210 237 - -
Pvu1g1458 482 MobiDBLite consensus disorder prediction 90 194 - -
Pvu1g1458 482 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 233 IPR004827 GO:0003700|GO:0006355
Pvu1g1458 482 PANTHER TRANSCRIPTION FACTOR TGA9 80 480 - -
Pvu1g1458 482 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 80 480 - -
Pvu1g1458 482 MobiDBLite consensus disorder prediction 1 41 - -
Pvu1g1458 482 Pfam Seed dormancy control 282 356 IPR025422 GO:0006351|GO:0043565
Pvu1g1458 482 ProSiteProfiles DOG1 domain profile. 264 478 IPR025422 GO:0006351|GO:0043565
Pvu1g1458 482 Gene3D - 190 240 - -
Pvu1g1458 482 MobiDBLite consensus disorder prediction 117 145 - -
Pvu1g1458 482 Pfam bZIP transcription factor 191 229 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1458 Pvu-Chr1 38819114 38826230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1458 61 480 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.306 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu1g1458 DOG1 8.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1458 K14431 - gmx:100815176 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1458 1 38819114 38826230 Pvu7g2653 7 49576913 49581561 PCT