Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1442 ATGGATTCCAATTCCCGTTACCAACTTCAGCAACAACACCAACCCAATTCTGGGTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTTCTCGCCAATTTCAAACAAGCCGAAGCTTCCATTAACGCCAACCCCTGGGAGGGCTCTGAACCACTTTTGAGATTCTTCAATTCCGGCGACACCCTAGATACCACGTCCCCTACCTTACGAGAGTTCGTGGATAACAAGGTTTCTAATGATAATAAACAACCGCAGGAGTCAACAATATCATCCTCCTCCTCATCATTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTATAGTACTTCTGTGTTACCCTCTGGGTACCCGAGGCATGATTCTACTGTAACTGTTACTTCATCTATGATGATGGGTTCTATGGGAATGGATCAGAGCGGAAAAAGCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAACATCTCCTTTCACAACGGGTATGATGCTATGAAAGGTGTTGAAAACTTTGGTGGTGTTAATGGCAATGATGGTGAGCTTAGAATATCTATGAACAGGATGAAGAATCACATTAGCTTCTCACCAAGGAGTCCTTCCTTGGGAATTTTATCACCAACCTCTAAAATGGGCTCGGAGGGTCTTAGGGTAACTAGCCCTGAGGATGGTAGACAGGGAGGTAGCAATGGTGATGCTACATATTACGGCCCTGGATTCCCTTGTGCTTCTTGGAATGAGACGCCAAACCCCAAAAGACAGCGAAATAGTAATGATGAGTTGCTTTCTGGAGATCAGAATGGAGAGCTGGGAAATCAAGTTCATTCTCTTTCGCATCATTTGAGTTTGCCACGAACATCCTCGGACATGTTTGCTATGGACAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTCGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGACTCTGAGCGAAAGACGGGCTAAATGCAAATGTATAAAGATGCAGAAATCAGAAACAGATAAAATTGCTTGA 1191 0.4374 MDSNSRYQLQQQHQPNSGLLRFRSAPTQVLANFKQAEASINANPWEGSEPLLRFFNSGDTLDTTSPTLREFVDNKVSNDNKQPQESTISSSSSSLSPLSRMNSQQGYSTSVLPSGYPRHDSTVTVTSSMMMGSMGMDQSGKSFNPNLLRQSSFPSGNFSNNISFHNGYDAMKGVENFGGVNGNDGELRISMNRMKNHISFSPRSPSLGILSPTSKMGSEGLRVTSPEDGRQGGSNGDATYYGPGFPCASWNETPNPKRQRNSNDELLSGDQNGELGNQVHSLSHHLSLPRTSSDMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKTLSERRAKCKCIKMQKSETDKIA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1442 396 Coils Coil 331 351 - -
Pvu1g1442 396 MobiDBLite consensus disorder prediction 252 277 - -
Pvu1g1442 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 383 IPR036638 GO:0046983
Pvu1g1442 396 CDD bHLH_AtbHLH_like 323 376 IPR045239 -
Pvu1g1442 396 MobiDBLite consensus disorder prediction 214 277 - -
Pvu1g1442 396 Pfam Helix-loop-helix DNA-binding domain 324 369 IPR011598 GO:0046983
Pvu1g1442 396 Gene3D - 320 392 IPR036638 GO:0046983
Pvu1g1442 396 MobiDBLite consensus disorder prediction 74 122 - -
Pvu1g1442 396 PANTHER TRANSCRIPTION FACTOR BHLH130 11 388 - -
Pvu1g1442 396 SMART finulus 324 374 IPR011598 GO:0046983
Pvu1g1442 396 MobiDBLite consensus disorder prediction 1 21 - -
Pvu1g1442 396 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 388 - -
Pvu1g1442 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 368 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1442 Pvu-Chr1 38622966 38625891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1442 1 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.476 3.07e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g1442 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1442 - - gmx:100814652 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1442 1 38622966 38625891 Pvu1g1442 1 38622966 38625891 ECH
Pvu1g1442 1 38622966 38625891 Pvu7g0022 7 136965 141398 ECH
Pvu1g1442 1 38622966 38625891 Pvu7g2647 7 49524839 49528381 PCT