Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1438 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGACGGCGCCACACTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCAGCACCGGCGCCGGAAAACGCCAACTCGTTCACCGCGCTGCTCGAGCTTCCGCCGACGCAGGCGGTGGAACTCCTTCACTCGCCGGACTCTGATGGAACTCGGAATCCGCTTAATTGCCACGTCAGCGCTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACGCCGCCTTAATTGAACGCGCCGCCAAGCTCTCCGTCTTCGCCGGCCAAAACTCGTCGTCGCCGGGGGAGGCGCGTCTGCTTCCGGCTGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAACCGCAAGAGACCGATTCGAACCCGTGCTCCACGCAAGGATGCGTTTCGGATCCCGCTGTTGAGAACAAGAACGAGAGAACCGCGAAGAGAAAGGAACGAGAGAAGAAAGTAACGGTTAAAGGATCGTCGAAGAAGATTAAGAGCGTCGCCGATGAGACCTCCGGCGATGGTGAGAAGCTTCCCTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCGGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAACTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTACTGATGGGGCATCTCTAATGGATAGTAACATACCTAGTATGATGACACCTCTCATGTGGCCAGAAATCCCAGTCAATGGCAACCGGCAGCATTACCAACAACAGTGGCAATTCGATGCATTCCACCAACCGCTATGGGAGCGGGAAGAAGTCAACCACAATTTTATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCAGCGAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1104 0.5145 MEQAPVGLRGSVHDGATLESIQFNEEIQGIMAPAPAPENANSFTALLELPPTQAVELLHSPDSDGTRNPLNCHVSANHKPYLLNSFGGNLTFPSNAALIERAAKLSVFAGQNSSSPGEARLLPAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPAVENKNERTAKRKEREKKVTVKGSSKKIKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1438 367 CDD bHLH_AtBPE_like 197 282 - -
Pvu1g1438 367 SMART finulus 213 263 IPR011598 GO:0046983
Pvu1g1438 367 Coils Coil 247 267 - -
Pvu1g1438 367 MobiDBLite consensus disorder prediction 110 193 - -
Pvu1g1438 367 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 367 IPR024097 GO:0006355
Pvu1g1438 367 MobiDBLite consensus disorder prediction 158 193 - -
Pvu1g1438 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Pvu1g1438 367 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Pvu1g1438 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Pvu1g1438 367 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 367 - -
Pvu1g1438 367 MobiDBLite consensus disorder prediction 139 154 - -
Pvu1g1438 367 Gene3D - 204 276 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1438 Pvu-Chr1 38532766 38543942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1438 7 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.813 2.69e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g1438 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1438 - - gmx:100814124 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1438 1 38532766 38543942 Pvu1g1438 1 38532766 38543942 ECH
Pvu1g1438 1 38532766 38543942 Pvu7g2644 7 49481470 49489122 PCT