Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1431 ATGACTGATATGTCTAAAACAGAAGTTGTCGATTCTGTCAGAATGTTAAGTTTCAGTTTTATGAAGTCCATCTCCATGTTCCGTGGAGTCTCCAGAGATTTCTCTACTGGGAAATGGCAAGCATATTTGGACAAAGGCAACGACGATCGCATCTTCCTTGGATTATTCGACACAGAAGAGGAAGCAGCTAGGGCTTATGATTTTGCGAGCATAAGGTTGAAAGGGCTCAGCGCCATTACTAATTTCAGTATCAGGTTTTATGATGTTGATGCCATTTTGCTTGGGCAAACTGATGATGAAAAAATGGTATATGAGTCAAAAGTCACTGTCCCTGTGGAAGATACGCAGCATTTTGAAGTGTTTCAGAACATTACTGGCCAAGGCTCTTCAACAATGGTATATGGTAGTAATGAAGGCAATCTGAACAGGGTGGGAGAGGAAGAAGTTGAAATGCCGTTGATGTCAGGAAACACAGAAGAACAGGCAAATTCTGTGGCATTGGCCTCATTAGAAGGAAATAGCTCCACTACAAATGTGCCCTTACAAAGAGAAAGTGACACTACAAGAAATGTGGACAGAAGTGGAGGTCAGAGAAGCACGGCCAGGGAAAGGTTCAATGCTTATAAGAAATTCATCAAGAGGCCTAGACCAAGTTGA 657 0.4216 MTDMSKTEVVDSVRMLSFSFMKSISMFRGVSRDFSTGKWQAYLDKGNDDRIFLGLFDTEEEAARAYDFASIRLKGLSAITNFSIRFYDVDAILLGQTDDEKMVYESKVTVPVEDTQHFEVFQNITGQGSSTMVYGSNEGNLNRVGEEEVEMPLMSGNTEEQANSVALASLEGNSSTTNVPLQRESDTTRNVDRSGGQRSTARERFNAYKKFIKRPRPS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1431 218 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
Pvu1g1431 218 MobiDBLite consensus disorder prediction 186 210 - -
Pvu1g1431 218 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Pvu1g1431 218 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pvu1g1431 218 MobiDBLite consensus disorder prediction 170 218 - -
Pvu1g1431 218 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Pvu1g1431 218 MobiDBLite consensus disorder prediction 170 185 - -
Pvu1g1431 218 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pvu1g1431 218 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM ISOFORM X1 1 93 - -
Pvu1g1431 218 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 93 - -
Pvu1g1431 218 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1431 Pvu-Chr1 38463292 38464293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1431 1 93 AP2-EREBP Transcription Factor Family AT1G51190 50.526 1.42e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1431 AP2 1.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1431 K09285 - pvu:PHAVU_001G137600g 429.483