Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1430 ATGGAAGAATCATACTCTATGCTGGAGGATGCAACAACCATGGAACCAACCATGTTAACCACTCAAGGCACTTCCAGGAATTGGAATCAAGAGTCACTGCTACTCCATCAACACATTGTGTCTCCACAAATGGAAACCACTTCTCAAGGCTCAATCAACAATTCCACCTGCACTTCATCCCTCCAATATGATGTGTTATCCCTTTTAGAGGGAATAATTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTATTCTCGTACAATGTTGGGTCAATTGCAGCCACAGCAACAGCAACATCAACGATTATTAATGAGAGGGAACGAAGTGATTGTGAGGAGAATGATCGAAGACAGCGTGAAGCATGTCTTGATTTGGTTGCAAAAACAATTGGTAGCAAGAGCTCTGTGTATCGAGGAGTAATCAAGTGCAACGATGATCGTTTCGAAGCATTTGTGTGGGATAACAGCAATCCAGGGGAAAGAGGAAGAACAGTTTATATTGGTGCTTACTCAAATGAAGTCGACGCCGCCAAAGCTCATGATTTAGTGTCAATCAGAATAGGGGGCTTAAAAGCATTAACGAATTTTCATGTGAGATGTTATTCCAAGGACATGGATGAAATGCGAAAAATGAGCAAATGGGACTATCTTTGTGCTGTTAGAGGGTTGGGCAAGGGCTATACAGACGCTGATTCCCCTTTCCGTGGCGTCTACAGGGTTCCGACAAGCAGGAAATGGGAAGCAAGGCTCGGTCGTGAAGGGTCACCAACCATACACTTGGGAACTTATTACACTGCAGAGGATGCAGCGAGAGCTTATGACATTATATCAATAAAACTGAAGGGAGGGGAAGCAATTACCAACTTTGAATGGAATTCCTATGAAACTGAGGGCATAATGGAGAGTGTGATTACTCAAGCAACGGATGGATCGATTATTCTGCAGAAAGAAGGAAACAATAAACAAACCGAAGCATCTTCTCAAAACAGCTCTTCAGTCCAATGCCATCCTCAACCACCGAGCAACCCATCCTTTTGTCGTTGCTGCAACAGCCAAATTCTCACACCAAGCAACCCTCATGCTCTTGGTGCCTTTGCTGATACTGCTGGAAATAGTGGAAGTGACAATTCAACTGGTAACGATGCTGTACAGTTTCGAAATGAGAATGCAACACAGCAACAGCCACTTCAGACTCAGAGGCAAGTGAGTTTTAACGAGGGCTTTAATCAGAACCTTGTCAACAACAACAACAATCAGCTTCCAAATCATAATGCAACACAGCAACAGTCACTTCAGACTCCAAGTCAAGTGAGTTTTAACTATGGCTTTAATCAGAATCTTGTAAACAACAACTACAACAACAGTAACCAATTTCTGCCTCAGAGTTCTAACCTTGCTTTGCCTGCTCCTGGCATCCGAAATCTAGAGTTAGAAAAGTGTGTCCGTTTCCCTGATTGGCGATCAGGTTTCGGAAAGAAGTTACTAGGGGGGGACATGGAATTGGAACCTTTAAGCAGTATTGCTTCCCTCAGTGTGCAACCTCTACCACAAGTCACGCTGAATGGAAGTACAGGATCAACACAGCTATACCCACCTGCATTGCACCAGAGTTATGAGCATCAAAACTTGAACTCCTTCTCCTCTGATAGTTTTCAGAATCCTATTTCTGAACCAAACAACAACGGCTTCCAAAGTCCAATTGATTTGGACATCAGAGATTATCTCAACAGGTCTTATATAGAAGACACTGATTTCACATGTGATTATGACATGTTTTCAGCCATGAATGGGGTAGATAAGACCTCCAGTGCTGTCAATGCTAGTAGCTTTACATAA 1845 0.4287 MEESYSMLEDATTMEPTMLTTQGTSRNWNQESLLLHQHIVSPQMETTSQGSINNSTCTSSLQYDVLSLLEGIINEKHIEETLIQSKLFSYNVGSIAATATATSTIINERERSDCEENDRRQREACLDLVAKTIGSKSSVYRGVIKCNDDRFEAFVWDNSNPGERGRTVYIGAYSNEVDAAKAHDLVSIRIGGLKALTNFHVRCYSKDMDEMRKMSKWDYLCAVRGLGKGYTDADSPFRGVYRVPTSRKWEARLGREGSPTIHLGTYYTAEDAARAYDIISIKLKGGEAITNFEWNSYETEGIMESVITQATDGSIILQKEGNNKQTEASSQNSSSVQCHPQPPSNPSFCRCCNSQILTPSNPHALGAFADTAGNSGSDNSTGNDAVQFRNENATQQQPLQTQRQVSFNEGFNQNLVNNNNNQLPNHNATQQQSLQTPSQVSFNYGFNQNLVNNNYNNSNQFLPQSSNLALPAPGIRNLELEKCVRFPDWRSGFGKKLLGGDMELEPLSSIASLSVQPLPQVTLNGSTGSTQLYPPALHQSYEHQNLNSFSSDSFQNPISEPNNNGFQSPIDLDIRDYLNRSYIEDTDFTCDYDMFSAMNGVDKTSSAVNASSFT* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1430 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 441 - -
Pvu1g1430 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 79 441 - -
Pvu1g1430 614 SUPERFAMILY DNA-binding domain 138 201 IPR016177 GO:0003677
Pvu1g1430 614 CDD AP2 237 295 IPR001471 GO:0003700|GO:0006355
Pvu1g1430 614 SMART rav1_2 139 206 IPR001471 GO:0003700|GO:0006355
Pvu1g1430 614 SMART rav1_2 236 299 IPR001471 GO:0003700|GO:0006355
Pvu1g1430 614 MobiDBLite consensus disorder prediction 412 434 - -
Pvu1g1430 614 ProSiteProfiles AP2/ERF domain profile. 139 200 IPR001471 GO:0003700|GO:0006355
Pvu1g1430 614 Gene3D AP2/ERF domain 236 294 IPR036955 GO:0003700|GO:0006355
Pvu1g1430 614 Gene3D AP2/ERF domain 139 202 IPR036955 GO:0003700|GO:0006355
Pvu1g1430 614 SUPERFAMILY DNA-binding domain 236 294 IPR016177 GO:0003677
Pvu1g1430 614 Pfam AP2 domain 237 285 IPR001471 GO:0003700|GO:0006355
Pvu1g1430 614 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1430 Pvu-Chr1 38448464 38452047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1430 58 305 AP2-EREBP Transcription Factor Family AT1G51190 32.567 8.13e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g1430 AP2 1.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1430 - K09285 pvu:PHAVU_001G137500g 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1430 1 38448464 38452047 Pvu1g1430 1 38448464 38452047 ECH